Publication output

An introduction to B-Cell epitope mapping and In Silico epitope prediction [Úvod do mapovania B-lymfocytových epitopov a in silico predikcie epitopov].

About the publication

Record:
POTOČŇÁKOVÁ, Lenka - BHIDE, Mangesh Ramesh - BORSZÉKOVÁ PULZOVÁ, Lucia. An introduction to B-Cell epitope mapping and In Silico epitope prediction [Úvod do mapovania B-lymfocytových epitopov a in silico predikcie epitopov]. In: Journal of Immunology Research. 2016. ISSN 2314-8861, Vol. 2016 (2016), art. no. 6760830, p. 1-11.
(2016: 3.276 - IF, 73 - H-index, 3.289 - IF 5y, 1.461 - SJR, Q1 - SJR Best Q, Q2 - JCR Best Q)
Year:
2016
Category:
ADM - Scientific papers in foreign journals registered in Web of Science or SCOPUS databases
Authors:
POTOČŇÁKOVÁ Lenka
40 %
UVMP share:
60 %
Edition:
Journal of Immunology Research
Vol. 2016 (2016), art. no. 6760830, p. 1-11
Country of issue:
United Kingdom
ISSN:
2314-8861
Research area:
180 - Medical, pharmaceutical and non-medical health sciences
Scientometrics:
2016: 3.276 - IF, 73 - H-index, 3.289 - IF 5y, 1.461 - SJR, Q1 - SJR Best Q, Q2 - JCR Best Q
Language:
english
 

Citations:

2024-2024: [1] BANSAL, Hina - AGGARWAL, Navya. Artificial Intelligence Techniques to Design Epitope-Mapped Vaccines and Diagnostics for Emerging Pathogens. In Handbook of AI-Based Models in Healthcare and Medicine: Approaches, Theories, and Applications, 2024-01-01, pp. 378-396. Dostupné na: https://doi.org/10.1201/9781003363361-19.
2024-2024: [1] CARROLL, M. - ROSENBAUM, E. - VISWANATHAN, R. Computational Methods to Predict Conformational B-Cell Epitopes. In Biomolecules, 2024-08-01, 14, 8, pp. Dostupné na: https://doi.org/10.3390/biom14080983.
2024-2024: [1] DHANUSHKUMAR, T. - M E, Santhosh - SELVAM, Prasanna Kumar - RAMBABU, Majji - DASEGOWDA, K. R. - VASUDEVAN, Karthick - GEORGE PRIYA DOSS., C. Advancements and hurdles in the development of a vaccine for triple-negative breast cancer: A comprehensive review of multi-omics and immunomics strategies. In Life Sciences, 2024-01-15, 337, pp. ISSN 00243205. Dostupné na: https://doi.org/10.1016/j.lfs.2023.122360.
2024-2024: [1] ELRASHEDY, Alyaa - NAYEL, Mohamed - SALAMA, Akram - SALAMA, Mohammed M. - HASAN, Mohamed E. Bioinformatics approach for structure modeling, vaccine design, and molecular docking of Brucella candidate proteins BvrR, OMP25, and OMP31. In Scientific Reports, 2024-12-01, 14, 1, pp. Dostupné na: https://doi.org/10.1038/s41598-024-61991-7.
2024-2024: [1] FERRETTI, Federica - KARDAR, Mehran. Universal characterization of epitope immunodominance from a multiscale model of clonal competition in germinal centers. In Physical Review E, 2024-06-01, 109, 6, pp. ISSN 24700045. Dostupné na: https://doi.org/10.1103/PhysRevE.109.064409.
2024-2024: [1] GRĄŹLEWSKA, Weronika - SOŁOWIŃSKA, Karolina - HOLEC-GĄSIOR, Lucyna. In silico epitope prediction of Borrelia burgdorferi sensu lato antigens for the detection of specific antibodies. In Journal of Immunological Methods, 2024-01-01, 524, pp. ISSN 00221759. Dostupné na: https://doi.org/10.1016/j.jim.2023.113596.
2024-2024: [1] HAN, Xinyu - HE, Xinrong - WANG, Xinya - LUO, Lianzhong - LI, Yubao - LAI, Dong - LIU, Hong - LIU, Jingwen - RAO, Shitao - LIU, Guangming. Comparative analysis of tropomyosin allergenicity in three different species of molluscs: insights into the role of amino acid composition in IgE epitopes. In Food and Function, 2024-04-02, 15, 10, pp. 5397-5413. ISSN 20426496. Dostupné na: https://doi.org/10.1039/d4fo00958d.
2024-2024: [1] HARRIS, Chantal T. - COHEN, Sivan. Reducing Immunogenicity by Design: Approaches to Minimize Immunogenicity of Monoclonal Antibodies. In BioDrugs, 2024-03-01, 38, 2, pp. 205-226. ISSN 11738804. Dostupné na: https://doi.org/10.1007/s40259-023-00641-2.
2024-2024: [1] HESSAMI, Anahita - MOGHARARI, Zahra - RAHIM, Fatemeh - KHALESI, Bahman - JAMAL NASSRULLAH, Othman - REZA RAHBAR, Mohammad - KHALILI, Saeed - JAHANGIRI, Abolfazl. In silico design of a novel hybrid epitope-based antigen harboring highly exposed immunogenic peptides of BamA, OmpA, and Omp34 against Acinetobacter baumannii. In International Immunopharmacology, 2024-12-05, 142, pp. ISSN 15675769. Dostupné na: https://doi.org/10.1016/j.intimp.2024.113066.
2024-2024: [1] KANT, Ravi - KHAN, Mohd Shoaib - CHOPRA, Madhu - SALUJA, Daman. Artificial intelligence-driven reverse vaccinology for Neisseria gonorrhoeae vaccine: Prioritizing epitope-based candidates. In Frontiers in Molecular Biosciences, 2024-01-01, 11, pp. Dostupné na: https://doi.org/10.3389/fmolb.2024.1442158.
2024-2024: [1] KHICHI, S. - MORANG, S. - DHAMIJA, P. - HANDU, S. A Multi-epitope Subunit Vaccine Identification and Development Against Scrub Typhus (Orientia tsutsugamushi) Using Immunoinformatics Approaches. In CUREUS JOURNAL OF MEDICAL SCIENCE. ISSN 2168-8184, 2024, vol. 16, no. 5, art. no. e61009.
2024-2024: [1] KÖSEOĞLU, Ahmet Efe - CAN, Hüseyin - GÜVENDI, Mervenur - ERKUNT ALAK, Sedef - DEĞIRMENCI DÖŞKAYA, Aysu - KARAKAVUK, Muhammet - DÖŞKAYA, Mert - ÜN, Cemal. Molecular characterization of Anaplasma ovis Msp4 protein in strains isolated from ticks in Turkey: A multi-epitope synthetic vaccine antigen design against Anaplasma ovis using immunoinformatic tools. In Biologicals, 2024-02-01, 85, pp. ISSN 10451056. Dostupné na: https://doi.org/10.1016/j.biologicals.2024.101749.
2024-2024: [1] LI, Rang - WILDEROTTER, Sabrina - STODDARD, Madison - VAN EGEREN, Debra - CHAKRAVARTY, Arijit - JOSEPH-MCCARTHY, Diane. Computational identification of antibody-binding epitopes from mimotope datasets. In Frontiers in Bioinformatics, 2024-01-01, 4, pp. Dostupné na: https://doi.org/10.3389/fbinf.2024.1295972.
2024-2024: [1] LU, Feng - XU, Jiahui - LIU, Yaobao - REN, Zhenyu - CHEN, Junhu - GONG, Weijuan - YIN, Yi - LI, Yinyue - QIAN, Li - HE, Xinlong - HAN, Xiu - LIN, Zhijie - LU, Jingyuan - ZHANG, Wenwen - LIU, Jiali - MENARD, Didier - HAN, Eun Taek - CAO, Jun. Plasmodium vivax serological exposure markers: PvMSP1-42-induced humoral and memory B-cell response generates long-lived antibodies. In PLoS Pathogens, 2024-06-01, 20, 6 June, pp. ISSN 15537366. Dostupné na: https://doi.org/10.1371/journal.ppat.1012334.
2024-2024: [1] MAJIDIANI, Hamidreza - FOTOVATI, Amir. Letter to the editor of Heliyon re: Bioinformatics-based prediction and screening of immunogenic epitopes of Toxoplasma gondii rhoptry proteins 7, 21 and 22 as candidate vaccine target [Heliyon, 9 [7] July 2023, e18176]. In Heliyon, 2024-05-30, 10, 10, pp. ISSN 24058440. Dostupné na: https://doi.org/10.1016/j.heliyon.2024.e31468.
2024-2024: [1] MAULANA, Firdausy Kurnia - HANDIJATNO, Didik. Computational Evaluation of the B-Cell Epitope of 37-kDa Outer Membrane Protein H Pasteurella multocida Type B from Nusa Tenggara Timur, IndonesiaTenggara Timur, Indonesia. In Iranian Journal of Veterinary Science and Technology, 2024-02-01, 16, 1, pp. 19-26. ISSN 2008465X. Dostupné na: https://doi.org/10.22067/ijvst.2024.81545.1237.
2024-2024: [1] MIFTARI, Mirushe H. - RISTE, Tonje B. - WALTHER, Bernt T. Leukolectins support lifelong innate immunity in lower vertebrates, and reveal dichotomies of several leukocytic lineages. In Fish and Shellfish Immunology, 2024-08-01, 151, pp. ISSN 10504648. Dostupné na: https://doi.org/10.1016/j.fsi.2024.109685.
2024-2024: [1] MURSALEEN, Sawvara - SARFRAZ, Asifa - SHEHROZ, Muhammad - ZAMAN, Aqal - RAHMAN, Faiz U. - MOURA, Arlindo A. - SHEHERYAR, Sheheryar - AZIZ, Shahid - ULLAH, Riaz - IQBAL, Zafar - NISHAN, Umar - SHAH, Mohibullah - SUN, Wenwen. Genome-level therapeutic targets identification and chimeric Vaccine designing against the Blastomyces dermatitidis. In Heliyon, 2024-08-30, 10, 16, pp. Dostupné na: https://doi.org/10.1016/j.heliyon.2024.e36153.
2024-2024: [1] RAHMAN, Sudais - CHIOU, Chien Chun - AHMAD, Shabir - ISLAM, Zia Ul - TANAKA, Tetsuya - ALOUFFI, Abdulaziz - CHEN, Chien Chin - ALMUTAIRI, Mashal M. - ALI, Abid. Subtractive Proteomics and Reverse-Vaccinology Approaches for Novel Drug Target Identification and Chimeric Vaccine Development against Bartonella henselae Strain Houston-1. In Bioengineering, 2024-05-01, 11, 5, pp. Dostupné na: https://doi.org/10.3390/bioengineering11050505.
2024-2024: [1] RODRÍGUEZ-DOMÍNGUEZ, Maria Carla - MONTES-DE-OCA-JIMÉNEZ, Roberto - VÁZQUEZ-CHAGOYÁN, Juan Carlos - RIVADENEIRA-BARREIRO, Pilar Eliana - ZAMBRANO-RODRÍGUEZ, Pablo Cleomenes - RUIZ-RIVA-PALACIO, Martha Elba - GUTIÉRREZ-CASTILLO, Adriana del Carmen - DE-CASTRO-SOARES, Siomar - VIEYRA-REYES, Patricia - ARTEAGA-TRONCOSO, Gabriel. Bioinformatic Approach of B and T Cell Epitopes of PLD and CP40 Proteins of Corynebacterium pseudotuberculosis ovis Mexican Isolate 2J-L towards a Peptide-Based Vaccine. In International Journal of Molecular Sciences, 2024-01-01, 25, 1, pp. ISSN 16616596. Dostupné na: https://doi.org/10.3390/ijms25010270.
2024-2024: [1] SIRA, Ella Mae Joy S. - BANICO, Edward C. - ODCHIMAR, Nyzar Mabeth O. - FAJARDO, Lauren Emily - FREMISTA, Ferdinand F. - REFUERZO, Hanna Angelika B. - DICTADO, Ana Patrisha A. - OROSCO, Fredmoore L. Immunoinformatics approach for designing a multiepitope subunit vaccine against porcine epidemic diarrhea virus genotype IIA spike protein. In Open Veterinary Journal, 2024-01-01, 14, 5, pp. 1224-1242. ISSN 22264485. Dostupné na: https://doi.org/10.5455/OVJ.2024.v14.i5.18.
2024-2024: [1] SUN, Ruoxuan - QIAN, Mark G. - ZHANG, Xiaobin. T and B cell epitope analysis for the immunogenicity evaluation and mitigation of antibody-based therapeutics. In mAbs, 2024-01-01, 16, 1, pp. ISSN 19420862. Dostupné na: https://doi.org/10.1080/19420862.2024.2324836.
2024-2024: [1] TOBIAS, Joshua - STEINBERGER, Peter - WILKINSON, Joy - KLAIS, Gloria - KUNDI, Michael - WIEDERMANN, Ursula. SARS-CoV-2 Vaccines: The Advantage of Mucosal Vaccine Delivery and Local Immunity. In Vaccines, 2024-07-01, 12, 7, pp. Dostupné na: https://doi.org/10.3390/vaccines12070795.
2024-2024: [1] VARDAXIS, Ioannis - SIMOVSKI, Boris - ANZAR, Irantzu - STRATFORD, Richard - CLANCY, Trevor. Deep learning of antibody epitopes using positional permutation vectors. In Computational and Structural Biotechnology Journal, 2024-12-01, 23, pp. 2695-2707. Dostupné na: https://doi.org/10.1016/j.csbj.2024.06.005.
2024-2024: [1] VARDAXIS, Ioannis - SIMOVSKI, Boris - ANZAR, Irantzu - STRATFORD, Richard - CLANCY, Trevor. Deep learning of antibody epitopes using positional permutation vectors. In Computational and Structural Biotechnology Journal, 2024-12-01, 23, pp. 2695-2707. Dostupné na: https://doi.org/10.1016/j.csbj.2024.06.005.
2024-2024: [1] XIA, Fei - LI, Mengsi - LIU, Qingmei - LIU, Hong - YANG, Yang - LIU, Meng - CHEN, Guixia - LUO, Lianzhong - LIU, Yixiang - LIU, Guangming. Allergenicity and Linear Epitope Analysis of Scy p 8, an Allergen from Mud Crab. In Journal of Agricultural and Food Chemistry, 2024-01-01, pp. ISSN 00218561. Dostupné na: https://doi.org/10.1021/acs.jafc.4c02693.
2024-2024: [1] YANG, Yang - HE, Xinrong - LI, Fajie - HE, Shaogui - LIU, Meng - LI, Mengsi - XIA, Fei - SU, Wenjin - LIU, Guangming. Animal-derived food allergen: A review on the available crystal structure and new insights into structural epitope. In Comprehensive Reviews in Food Science and Food Safety, 2024-05-01, 23, 3, pp. Dostupné na: https://doi.org/10.1111/1541-4337.13340.
2024-2024: [1] YUAN, Lifang - LI, Xu - LI, Minchao - BI, Rongjun - LI, Yingrui - SONG, Jiaping - LI, Wei - YAN, Mingchen - LUO, Huanle - SUN, Caijun - SHU, Yuelong. In silico design of a broad-spectrum multiepitope vaccine against influenza virus. In International Journal of Biological Macromolecules, 2024-01-01, 254, pp. ISSN 01418130. Dostupné na: https://doi.org/10.1016/j.ijbiomac.2023.128071.
2024-2024: [1] YUAN, Lifang - ZHANG, Shengze - BI, Rongjun - LIU, Xuejie - HAN, Zirong - LI, Minchao - LIAO, Xinzhong - XIE, Ting - BAI, Shaohui - XIE, Qian - LUO, Chuming - JIANG, Ying - YUAN, Jianhui - LUO, Huanle - YAN, Huacheng - SUN, Caijun - SHU, Yuelong. A broad-spectrum multiepitope vaccine against seasonal influenza A and B viruses in mice. In eBioMedicine, 2024-08-01, 106, pp. Dostupné na: https://doi.org/10.1016/j.ebiom.2024.105269.
2023-2023: [1] AYUB, F. - AHMED, H. - SOHAIL, T. - SHAHZAD, K. - CELIK, F. - WANG, X. - SIMSEK, S. - CAO, J.P. Bioinformatics-based prediction and screening of immunogenic epitopes of Toxoplasma gondii rhoptry proteins 7, 21 and 22 as candidate vaccine target. In Heliyon. ISSN 2405-8440, 2023, vol. 9, no. 7, art. no. e18176.
2023-2023: [1] AZULAY, Asaf - COHEN-LAVI, Liel - FRIEDMAN, Lilach M. - MCGARGILL, Maureen A. - HERTZ, Tomer. Mapping antibody footprints using binding profiles. In Cell Reports Methods, 2023-08-28, 3, 8, pp. Dostupné na: https://doi.org/10.1016/j.crmeth.2023.100566.
2023-2023: [1] DESTA, I.T. - KOTELNIKOV, S. - JONES, G. - GHANI, U. - ABYZOV, M. - KHOLODOV, Y. - STANDLEY, D.M. - BEGLOV, D. - VAJDA, S. - KOZAKOV, D. The ClusPro AbEMap web server for the prediction of antibody epitopes. In Nature protocols. ISSN 1754-2189, 2023, vol. 18, no. 6, p. 1814-1840.
2023-2023: [1] DESTA, I.T. - KOTELNIKOV, S. - JONES, G. - GHANI, U. - ABYZOV, M. - KHOLODOV, Y. - STANDLEY, D.M. - SABITOVA, M. - BEGLOV, D. - VAJDA, S. - KOZAKOV, D. Mapping of antibody epitopes based on docking and homology modeling. In PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. ISSN 0887-3585, 2023, vol. 91, no. 2, p. 171-182.
2023-2023: [1] DISHNICA, Klevia - PIUBELLI, Chiara - MANFREDI, Marcello - KONDAVEETI, Ravi Teja - LONGONI, Silvia Stefania - DEGANI, Monica - BUONFRATE, Dora - GIORGETTI, Alejandro - TIBERTI, Natalia. Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae. In PARASITES & VECTORS, 2023, vol. 16, no. 1, pp. ISSN 1756-3305. Dostupné na: https://doi.org/10.1186/s13071-023-05675-7.
2023-2023: [1] DUAY, S.S. - YAP, R.C.Y. - GAITANO, A.L. - SANTOS, J.A.A. - MACALINO, S.J.Y. Roles of Virtual Screening and Molecular Dynamics Simulations in Discovering and Understanding Antimalarial Drugs. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. ISSN 1661-6596, 2023, vol. 24, no. 11, art. no. 9289.
2023-2023: [1] FERNANDES, Luís Gustavo Romani - SPILLNER, Edzard - JAKOB, Thilo. Potential and limitations of epitope mapping and molecular targeting in Hymenoptera venom allergy. In Frontiers in Allergy, 2023-01-01, 4, pp. Dostupné na: https://doi.org/10.3389/falgy.2023.1327391.
2023-2023: [1] GOOD, Michael F. - YANOW, Stephanie K. Hiding in plain sight: an epitope-based strategy for a subunit malaria vaccine. In Trends in Parasitology, 2023-11-01, 39, 11, pp. 929-935. ISSN 14714922. Dostupné na: https://doi.org/10.1016/j.pt.2023.08.006.
2023-2023: [1] GRĄŹLEWSKA, Weronika - HOLEC-GĄSIOR, Lucyna - SOŁOWIŃSKA, Karolina - CHMIELEWSKI, Tomasz - FIECEK, Beata - CONTRERAS, Marinela. Epitope Mapping of BmpA and BBK32 Borrelia burgdorferi Sensu Stricto Antigens for the Design of Chimeric Proteins with Potential Diagnostic Value. In ACS Infectious Diseases, 2023-11-10, 9, 11, pp. 2160-2172. Dostupné na: https://doi.org/10.1021/acsinfecdis.3c00258.
2023-2023: [1] GRĄŹLEWSKA, Weronika - HOLEC-GĄSIOR, Lucyna. Antibody Cross-Reactivity in Serodiagnosis of Lyme Disease. In Antibodies, 2023-12-01, 12, 4, pp. ISSN 20734468. Dostupné na: https://doi.org/10.3390/antib12040063.
2023-2023: [1] HAMED, Samira M. - SAKR, Masarra M. - EL-HOUSSEINY, Ghadir S. - WASFI, Reham - ABOSHANAB, Khaled M. State of the art in epitope mapping and opportunities in COVID-19. In FUTURE SCIENCE OA, 2023, vol. 9, no. 1, pp. ISSN 2056-5623. Dostupné na: https://doi.org/10.2144/fsoa-2022-0048.
2023-2023: [1] HE, Jianfeng - LI, Jing - LEUNG, Kingsley. Dynamic structural analysis-based epitope prediction of Exendin-4 in aqueous solution. In Physical Review E, 2023-08-01, 108, 2, pp. ISSN 24700045. Dostupné na: https://doi.org/10.1103/PhysRevE.108.024403.
2023-2023: [1] HOFFSTEDT, Marc - STEIN, Matthias Oliver - BAUMANN, Knut - WÄTZIG, Hermann. Experimentally Observed Conformational Changes in Antibodies Due to Binding and Paratope-epitope Asymmetries. In Journal of Pharmaceutical Sciences, 2023-01-01, pp. ISSN 00223549. Dostupné na: https://doi.org/10.1016/j.xphs.2023.06.003.
2023-2023: [1] KING, Samantha M. - BRYAN, Shane P. - HILCHEY, Shannon P. - WANG, Jiong - ZAND, Martin S. First Impressions Matter: Immune Imprinting and Antibody Cross-Reactivity in Influenza and SARS-CoV-2. In PATHOGENS, 2023, vol. 12, no. 2, pp. Dostupné na: https://doi.org/10.3390/pathogens12020169.
2023-2023: [1] KOLESNIKOV, I. A. - TIMOFEEV, V. I. - ERMAKOV, A. V. - IVANOVSKY, A. S. - DYAKOVA, Yu A. - PISAREVSKY, Yu V. - KOVALCHUK, M. V. Search for Potential Epitopes in the Envelope Protein of the African Swine Fever Virus. In Crystallography Reports, 2023-12-01, 68, 6, pp. 967-974. ISSN 10637745. Dostupné na: https://doi.org/10.1134/S1063774523601077.
2023-2023: [1] KOLESNIKOV, I. A. - TIMOFEEV, V. I. - NIKOLENKO, M. V. - ERMAKOV, A. V. - IVANOVSKY, A. S. - DYAKOVA, Yu A. - PISAREVSKY, Yu V. - KOVALCHUK, M. V. Search for New Potential T-Cell and B-Cell Epitopes in the Spike Protein of SARS-CoV-2. In Crystallography Reports, 2023-12-01, 68, 6, pp. 955-966. ISSN 10637745. Dostupné na: https://doi.org/10.1134/S1063774523601089.
2023-2023: [1] KUMAR, Nishant - BAJIYA, Nisha - PATIYAL, Sumeet - RAGHAVA, Gajendra P.S. Multi-perspectives and challenges in identifying B-cell epitopes. In Protein Science, 2023-11-01, 32, 11, pp. ISSN 09618368. Dostupné na: https://doi.org/10.1002/pro.4785.
2023-2023: [1] Li, X. - Wang, H.X. - Yin, X.F. - Li, X.H. - Li, H.X. - Zhang, X.H. - Wang, Z. - Qiu, Y.R. Screening epitope peptides based on a phage-displayed random peptide and peptide microarrays to contribute to improving the diagnostic efficiency of systemic lupus erythematosus. In IMMUNOLOGY LETTERS. ISSN 0165-2478, 2023, vol. 259, p. 30-36.
2023-2023: [1] LIU, Yufeng - LIU, Yinbo - WANG, Shuyu - ZHU, Xiaolei. LBCE-XGB: A XGBoost Model for Predicting Linear B-Cell Epitopes Based on BERT Embeddings. In INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, 2023, vol. 15, no. 2, pp. 293-305. ISSN 1913-2751. Dostupné na: https://doi.org/10.1007/s12539-023-00549-z.
2023-2023: [1] MAHMOUDVAND, S. - GHALEH, H.E.G. - JALILIAN, F.A. - FARZANEHPOUR, M. - DOROSTKAR, R. Design of a multi-epitope-based vaccine consisted of immunodominant epitopes of structural proteins of SARS-CoV-2 using immunoinformatics approach. In BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY. ISSN 0885-4513, 2023, vol. 70, no. 3, p. 1189-1205.
2023-2023: [1] MANZOOR, Hufsa - WANI, Arif. Evolution of Machine Learning Methods in Linear B-Cell Epitope Prediction. In Proceedings of the 17th INDIACom; 2023 10th International Conference on Computing for Sustainable Global Development, INDIACom 2023, 2023-01-01, pp. 979-985.
2023-2023: [1] MUNIZ, Ana Paula Mendes - TOLESANO-PASCOLI, Graziela - VIEIRA, Raissa Brauner Kamla - POLLI, Mayara Garcia - RODRIGUES, Vinicius da Silva - GONZAGA, Henrique Tomaz - MAMEDE, Carla Cristine Neves - DA CUNHA, Nathalie Costa - SZABO, Matias Juan Pablo - YOKOSAWA, Jonny. Evaluation of a mimotope of the Rickettsia outer membrane protein A (OmpA) as an antigen in enzyme-linked immunosorbent assay to detect rickettsiosis in capybaras (Hydrochoerus hydrochaeris), horses (Equus caballus), and opossums (Didelphis sp.). In EXPERIMENTAL AND APPLIED ACAROLOGY, 2023, vol. 89, no. 2, pp. 317-327. ISSN 0168-8162. Dostupné na: https://doi.org/10.1007/s10493-023-00776-5.
2023-2023: [1] NAYAK, Subhashree Subhasmita - SETHI, Guneswar - RAMADAS, Krishna. Design of multi-epitope based vaccine against Mycobacterium tuberculosis: a subtractive proteomics and reverse vaccinology based immunoinformatics approach. In Journal of Biomolecular Structure and Dynamics, 2023-01-01, 41, 23, pp. 14116-14134. ISSN 07391102. Dostupné na: https://doi.org/10.1080/07391102.2023.2178511.
2023-2023: [1] NISHIKAWA, K. - MASUI, S. - ISHIDA, H. Virtual crossmatching and epitope analysis in kidney transplantation: What the physician involved in kidney transplantation should know? In INTERNATIONAL JOURNAL OF UROLOGY. ISSN 0919-8172, 2023, vol. 30, no. 1, p. 7-19.
2023-2023: [1] PAL, Aranya - PYNE, Nibedita - PAUL, Santanu. In-Silico Designing of a Multi-Epitope Vaccine against SARS-CoV2 and Studying the Interaction of the Vaccine with Alpha, Beta, Delta and Omi-cron Variants of Concern. In Current Drug Discovery Technologies, 2023-01-01, 20, 1, pp. ISSN 15701638. Dostupné na: https://doi.org/10.2174/1570163819666220909114900.
2023-2023: [1] PARK, J.Y. - CHO, S.H. Production of monoclonal antibody of heat-labile toxin A subunit to identify enterotoxigenic Escherichia coli by epitope mapping using synthetic peptides. In FRONTIERS IN IMMUNOLOGY. ISSN 1664-3224, 2023, vol. 14, art. no. 1152910.
2023-2023: [1] PLYUSNIN, Alexander - KEDARI, Ashwini - RISSANEN, Ilona - IHEOZOR-EJIOFOR, Rommel Paneth - LUNDKVIST, Åke - VAPALAHTI, Olli - LEVANOV, Lev. Validation of an antigenic site targeted by monoclonal antibodies against Puumala virus. In Journal of General Virology, 2023-01-01, 104, 10, pp. ISSN 00221317. Dostupné na: https://doi.org/10.1099/jgv.0.001901.
2023-2023: [1] RAKITINA, Tatiana V. - SMIRNOVA, Evgeniya V. - PODSHIVALOV, David D. - TIMOFEEV, Vladimir I. - KOMOLOV, Aleksandr S. - VLASKINA, Anna V. - GAEVA, Tatiana N. - VASILOV, Raif G. - DYAKOVA, Yulia A. - KOVALCHUK, Mikhail V. An Algorithm for the Development of a Recombinant Antiherpetic Subunit Vaccine Combining the Crystal Structure Analysis, AlphaFold2-Based Modeling, and Immunoinformatics. In Crystals, 2023-10-01, 13, 10, pp. Dostupné na: https://doi.org/10.3390/cryst13101416.
2023-2023: [1] RU, Yi - HAO, Rongzeng - WU, Chunping - LI, Yajun - LU, Bingzhou - LIU, Huanan - TIAN, Hong - LI, Dan - SHI, Zhengwang - LUO, Juncong - MA, Kun - ZHANG, Guicai - LIU, Xiangtao - ZHENG, Haixue. Identification of Potential Novel B-Cell Epitopes of Capsid Protein VP2 in Senecavirus A. In Microbiology Spectrum, 2023-08-01, 11, 4, pp. Dostupné na: https://doi.org/10.1128/spectrum.04472-22.
2023-2023: [1] SATVATI, S. - GHASEMI, Y. - NAJAFIPOUR, S. - ESKANDARI, S. - MAHMOODI, S. - NEZAFAT, N. - HASHEMZAEI, M. Finding and engineering the newly found bacterial superoxide dismutase enzyme to increase its thermostability and decrease the immunogenicity: a computational and experimental research. In ARCHIVES OF MICROBIOLOGY. ISSN 0302-8933, 2023, vol. 205, no. 7, art. no. 260.
2023-2023: [1] SINGH, Satyendra - RAO, Abhishek - KUMAR, Ketan - MISHRA, Amit - PRAJAPATI, Vijay Kumar. Translational vaccinomics and structural filtration algorithm to device multiepitope vaccine for catastrophic monkeypox virus. In COMPUTERS IN BIOLOGY AND MEDICINE, 2023, vol. 153, no., pp. ISSN 0010-4825. Dostupné na: https://doi.org/10.1016/j.compbiomed.2022.106497.
2023-2023: [1] SONG, Jinxing - WANG, Mengxiang - DU, Yongkun - WAN, Bo - ZHANG, Angke - ZHANG, Yuhang - ZHUANG, Guoqing - JI, Pengchao - WU, Yanan - ZHANG, Gaiping. Identification of a linear B-cell epitope on the African swine fever virus CD2v protein. In INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2023, vol. 232, no., pp. ISSN 0141-8130. Dostupné na: https://doi.org/10.1016/j.ijbiomac.2023.123264.
2023-2023: [1] WANG, Danqi - CHEN, Yuejun - XIANG, Shan - HU, Huiting - ZHAN, Yujuan - YU, Ying - ZHANG, Jingwen - WU, Pian - LIU, Fei yue - KAI, Tianhan - DING, Ping. Recent advances in immunoassay technologies for the detection of human coronavirus infections. In FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2023, vol. 12, no., pp. ISSN 2235-2988. Dostupné na: https://doi.org/10.3389/fcimb.2022.1040248.
2023-2023: [1] YUAN, Xiao. BeeTLe: A Framework for Linear B-Cell Epitope Prediction and Classification. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2023-01-01, 14174 LNAI, pp. 477-494. ISSN 03029743. Dostupné na: https://doi.org/10.1007/978-3-031-43427-3_29.
2023-2023: [1] ZHANG, Ziye - LI, Xiu-Min - WANG, Hao - LIN, Hong - XIAO, Hang - LI, Zhenxing. Seafood allergy: Allergen, epitope mapping and immunotherapy strategy. In CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION, 2023, vol. 63, no. 10, pp. 1314-1338. ISSN 1040-8398. Dostupné na: https://doi.org/10.1080/10408398.2023.2181755.
2022-2022: [1] AL-MEGRIN, Wafa Abdullah - KARKASHAN, Alaa - ALNUQAYDAN, Abdullah M. - ALKHAYL, Faris F. Aba - ALRUMAIHI, Faris - ALMATROUDI, Ahmad - ALLEMAILEM, Khaled S. Design of a Multi-Epitopes Based Chimeric Vaccine against Enterobacter cloacae Using Pan-Genome and Reverse Vaccinology Approaches. In VACCINES, 2022, vol. 10, no. 6, pp. Dostupné na: https://doi.org/10.3390/vaccines10060886.
2022-2022: [1] ALMALKI, Shaia - BEIGH, Saba - AKHTER, Naseem - ALHARBI, Read A. In silico epitope-based vaccine design against influenza a neuraminidase protein: Computational analysis established on B- and T-cell epitope predictions. In SAUDI JOURNAL OF BIOLOGICAL SCIENCES, 2022, vol. 29, no. 6, pp. ISSN 1319-562X. Dostupné na: https://doi.org/10.1016/j.sjbs.2022.103283.
2022-2022: [1] ALVES, Mariliana Luiza Ferreira - FERREIRA, Marcos Roberto Alves - RODRIGUES, Rafael Rodrigues - CONCEICAO, Fabricio Rochedo. Clostridium haemolyticum, a review of beta toxin and insights into the antigen design for vaccine development. In MOLECULAR IMMUNOLOGY, 2022, vol. 148, no., pp. 45-53. ISSN 0161-5890. Dostupné na: https://doi.org/10.1016/j.molimm.2022.05.007.
2022-2022: [1] ARAF, Yusha - MOIN, Abu Tayab - TIMOFEEV, Vladimir I. - FARUQUI, Nairita Ahsan - SAIARA, Syeda Afra - AHMED, Nafisa - PARVEZ, Md. Sorwer Alam - RAHAMAN, Tanjim Ishraq - SARKAR, Bishajit - ULLAH, Md. Asad - HOSEN, Mohammad Jakir - ZHENG, Chunfu. Immunoinformatic Design of a Multivalent Peptide Vaccine Against Mucormycosis: Targeting FTR1 Protein of Major Causative Fungi. In FRONTIERS IN IMMUNOLOGY, 2022, vol. 13, no., pp. ISSN 1664-3224. Dostupné na: https://doi.org/10.3389/fimmu.2022.863234.
2022-2022: [1] BARAL, Prabin - PAVADAI, Elumalai - ZHOU, Ziyou - XU, Yang - TISON, Christopher K. - POKHREL, Rudramani - GERSTMAN, Bernard S. - CHAPAGAIN, Prem P. Immunoinformatic screening of Marburgvirus epitopes and computational investigations of epitope-allele complexes. In INTERNATIONAL IMMUNOPHARMACOLOGY, 2022, vol. 111, no., pp. ISSN 1567-5769. Dostupné na: https://doi.org/10.1016/j.intimp.2022.109109.
2022-2022: [1] BHARGAV, Anasuya - FATIMA, Firdaus - CHAURASIA, Pratibha - SETH, Surabhi - RAMACHANDRAN, Srinivasan. Computer-Aided Tools and Resources for Fungal Pathogens: An Application of Reverse Vaccinology for Mucormycosis. In Monoclonal Antibodies in Immunodiagnosis and Immunotherapy, 2022-10-01, 41, 5, pp. 243-254. Dostupné na: https://doi.org/10.1089/mab.2021.0039.
2022-2022: [1] CAN, Huseyin - AKSOY GOKMEN, Aysegul - DOSKAYA, Mert - ERKUNT ALAK, Sedef - DEGIRMENCI DOSKAYA, Aysu - KARAKAVUK, Muhammet - KOSEOGLU, Ahmet Efe - KARAKAVUK, Tugba - GUL, Ceren - GUVENDI, Mervenur - GUL, Aytul - GURUZ, Adnan Yuksel - KAYA, Selcuk - MERCIER, Aurelien - UN, Cemal. Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples. In BMC INFECTIOUS DISEASES, 2022, vol. 22, no. 1, pp. Dostupné na: https://doi.org/10.1186/s12879-022-07088-w.
2022-2022: [1] CAPEL, Henriette - WEILER, Robin - DIJKSTRA, Maurits - VLEUGELS, Reinier - BLOEM, Peter - FEENSTRA, K. Anton. ProteinGLUE multi-task benchmark suite for self-supervised protein modeling. In SCIENTIFIC REPORTS, 2022, vol. 12, no. 1, pp. ISSN 2045-2322. Dostupné na: https://doi.org/10.1038/s41598-022-19608-4.
2022-2022: [1] CARRERA, Mónica - MAGADÁN, Susana. Proteomics for Development of Food Allergy Vaccines. In Methods in Molecular Biology, 2022-01-01, 2410, pp. 673-689. ISSN 10643745. Dostupné na: https://doi.org/10.1007/978-1-0716-1884-4_36.
2022-2022: [1] CHEBIB, Soraya - MENG, Chen - LUDWIG, Christina - BERGMANN, Karl-Christian - BECKER, Sylvia - DIEREND, Werner - SCHWAB, Wilfried. Identification of allergenomic signatures in allergic and well-tolerated apple genotypes using LC-MS/MS. In FOOD CHEMISTRY: MOLECULAR SCIENCES, 2022, vol. 4, no., pp. ISSN 2666-5662. Dostupné na: https://doi.org/10.1016/j.fochms.2022.100111.
2022-2022: [1] DALY, Matthew E. - WANG, Kai - PAN, Xiaoyan - DEPAU, Rosa L. - MARSH, Justin - CAPOZZI, Francesco - JOHNSON, Phil - GETHINGS, Lee A. - MILLS, E. N. Clare. The Fate of IgE Epitopes and Coeliac Toxic Motifs during Simulated Gastrointestinal Digestion of Pizza Base. In FOODS, 2022, vol. 11, no. 14, pp. Dostupné na: https://doi.org/10.3390/foods11142000.
2022-2022: [1] DE LA FUENTE, Jose - MORAGA-FERNANDEZ, Alberto - ALBERDI, Pilar - DIAZ-SANCHEZ, Sandra - GARCIA-ALVAREZ, Olga - FERNANDEZ-MELGAR, Ruben - CONTRERAS, Marinela. A Quantum Vaccinomics Approach for the Design and Production of MSP4 Chimeric Antigen for the Control of Anaplasma phagocytophilum Infections. In VACCINES, 2022, vol. 10, no. 12, pp. Dostupné na: https://doi.org/10.3390/vaccines10121995.
2022-2022: [1] DE LAURO, Alfredo - DI RIENZO, Lorenzo - MIOTTO, Mattia - OLIMPIERI, Pier Paolo - MILANETTI, Edoardo - RUOCCO, Giancarlo. Shape Complementarity Optimization of Antibody-Antigen Interfaces: The Application to SARS-CoV-2 Spike Protein. In FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, vol. 9, no., pp. Dostupné na: https://doi.org/10.3389/fmolb.2022.874296.
2022-2022: [1] FARNUDIAN-HABIBI, Amir - MIRJANI, Mobina - MONTAZER, Vahideh - ALIEBRAHIMI, Shima - KATOUZIAN, Iman - ABDOLHOSSEINI, Saeed - RAHMANI, Ali - KEYVANI, Hossein - OSTAD, Seyed Nasser - RAD-MALEKSHAHI, Mazda. Review on Approved and Inprogress COVID-19 Vaccines. In Iranian Journal of Pharmaceutical Research, 2022-01-01, 21, 1, pp. ISSN 17350328. Dostupné na: https://doi.org/10.5812/ijpr.124228.
2022-2022: [1] FIRDAUS, Moh Egy Rahman - MUSTOPA, Apon Zaenal - TRIRATNA, Lita - SYAHPUTRA, Gita - NURFATWA, Maritsa. Dissection of Capsid Protein HPV 52 to Rationalize Vaccine Designs Using Computational Approaches Immunoinformatics and Molecular Docking. In Asian Pacific Journal of Cancer Prevention, 2022-01-01, 23, 7, pp. 2243-2253. ISSN 15137368. Dostupné na: https://doi.org/10.31557/APJCP.2022.23.7.2243.
2022-2022: [1] GHADAKSAZ, Abdolamir - IMANI FOOLADI, Abbas Ali - MAHMOODZADEH HOSSEINI, Hamideh - NEJAD SATARI, Taher - AMIN, Mohsen. Targeting the EGFR in cancer cells by fusion protein consisting of arazyme and third loop of TGF-alpha: an in silico study. In Journal of Biomolecular Structure and Dynamics, 2022-01-01, 40, 22, pp. 11744-11757. ISSN 07391102. Dostupné na: https://doi.org/10.1080/07391102.2021.1963318.
2022-2022: [1] GONZAGA, Zennia Jean C. - ZHANG, Jinyong - REHM, Bernd H. A. Intranasal Delivery of Antigen-Coated Polymer Particles Protects against Pseudomonas aeruginosa Infection br. In ACS INFECTIOUS DISEASES. ISSN 2373-8227, 2022, vol. 8, no. 4, pp. 744-756. Dostupné na: https://doi.org/10.1021/acsinfecdis.1c00434.
2022-2022: [1] GUEVARRA, Leonardo A. - DE SAGON, Scott Dean P. - TEH, Treena Rica D. - CRUZ, Maria Katrina Diana M. - CAPISTRANO, Nikki Cyrill C. - MARIA, Austine James Z. Sta - CORALES, Laarni Grace M. - DALMACIO, Leslie Michelle M. An immunoglobulin Y that specifically binds to an in silico-predicted unique epitope of Zika virus non-structural 1 antigen. In ASIAN PACIFIC JOURNAL OF TROPICAL MEDICINE. ISSN 1995-7645, 2022, vol. 15, no. 1, pp. 35-43. Dostupné na: https://doi.org/10.4103/1995-7645.335701.
2022-2022: [1] INACIO, Moises Morais - CRUZ-LEITE, Vanessa Rafaela Milhomem - MOREIRA, Andre Luis Elias - MATTOS, Karine - PACCEZ, Juliano Domiraci - RUIZ, Orville Hernandez - VENTURINI, James - DE SOUZA CARVALHO MELHEM, Marcia - PANIAGO, Anamaria Mello Miranda - DE ALMEIDA SOARES, Celia Maria - WEBER, Simone Schneider - BORGES, Clayton Luiz. Challenges in Serologic Diagnostics of Neglected Human Systemic Mycoses: An Overview on Characterization of New Targets. In PATHOGENS, 2022, vol. 11, no. 5, pp. Dostupné na: https://doi.org/10.3390/pathogens11050569.
2022-2022: [1] ISMAIL, Saba - ALSOWAYEH, Noorah - ABBASI, Hyder Wajid - ALBUTTI, Aqel - UL QAMAR, Muhammad Tahir - AHMAD, Sajjad - RAZA, Rabail Zehra - SADIA, Khulah - ABBASI, Sumra Wajid. Pan-Genome-Assisted Computational Design of a Multi-Epitopes-Based Vaccine Candidate against Helicobacter cinaedi. In INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2022, vol. 19, no. 18, pp. Dostupné na: https://doi.org/10.3390/ijerph191811579.
2022-2022: [1] JAISWAL, Grijesh - YADUVANSHI, Shivani - KUMAR, Veerendra. A potential peptide inhibitor of SARS-CoV-2 S and human ACE2 complex. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, vol. 40, no. 14, pp. 6671-6681. ISSN 0739-1102. Dostupné na: https://doi.org/10.1080/07391102.2021.1889665.
2022-2022: [1] JAMIR, Esther - KIEWHUO, Kikrusenuo - PRIYADARSINEE, Lipsa - SARMA, Himakshi - NAGAMANI, Selvaraman - SASTRY, G. Narahari. Structure-function relationships among selected human coronaviruses. In INDIAN JOURNAL OF BIOCHEMISTRY & BIOPHYSICS, 2022, vol. 59, no. 5, pp. 536-551. ISSN 0301-1208.
2022-2022: [1] KHALID, Kashaf - SAEED, Umar - ALJUAID, Mohammad - ALI, Mohammad Ishtiaq - ANJUM, Awais - WAHEED, Yasir. Immunoinformatic Approach to Contrive a Next Generation Multi-Epitope Vaccine Against Achromobacter xylosoxidans Infections. In FRONTIERS IN MEDICINE, 2022, vol. 9, no., pp. Dostupné na: https://doi.org/10.3389/fmed.2022.902611.
2022-2022: [1] LEI, Yutian - SHEN, Yuan - ZUO, Chengyi - LU, Li - CROMMEN, Jacques - WANG, Qiqin - JIANG, Zhengjin. Emerging affinity ligands and support materials for the enrichment of monoclonal antibodies. In TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2022, vol. 157, no., pp. ISSN 0165-9936. Dostupné na: https://doi.org/10.1016/j.trac.2022.116744.
2022-2022: [1] LIU, Yan - LIU, Zheng. Identification of linear epitope with Multiple Sequence Representation Learning Network. In Proceedings 2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022, 2022-01-01, pp. 3078-3084. Dostupné na: https://doi.org/10.1109/BIBM55620.2022.9995033.
2022-2022: [1] MAHMOUDVAND, Shahab - SHOKRI, Somayeh - MAKVANDI, Manoochehr - TAHERKHANI, Reza - RASHNO, Mohammad - JALILIAN, Farid Azizi - ANGALI, Kambiz Ahmadi. In silico prediction of T-cell and B-cell epitopes of human papillomavirus type 16 L1 protein. In BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY. ISSN 0885-4513, 2022, vol. 69, no. 2, pp. 514-525. Dostupné na: https://doi.org/10.1002/bab.2128.
2022-2022: [1] MALEKI, Avisa - RUSSO, Giulia - PALUMBO, Giuseppe Alessandro Parasiliti - PAPPALARDO, Francesco. In silico design of recombinant multi-epitope vaccine against influenza A virus. In BMC BIOINFORMATICS. ISSN 1471-2105, 2022, vol. 22, no. SUPPL 14, pp. Dostupné na: https://doi.org/10.1186/s12859-022-04581-6.
2022-2022: [1] MAVRINA, Ekaterina - KIMBLE, Leighann - WAURY, Katharina - GOGISHVILI, Dea - DE SAN JOSE, Nerea Gomez - DAS, Shreyasee - COPPENS, Salome - FERNANDES GOMES, Barbara - MRAVINACOVA, Sara - WOJDALA, Anna Lidia - BOLSEWIG, Katharina - BAYOUMY, Sherif - BURTSCHER, Felicia - MOHAUPT, Pablo - WILLEMSE, Eline - TEUNISSEN, Charlotte - MIRIADE CONSORTIUM. Multi-Omics Interdisciplinary Research Integration to Accelerate Dementia Biomarker Development (MIRIADE). In FRONTIERS IN NEUROLOGY, 2022, vol. 13, no., pp. ISSN 1664-2295. Dostupné na: https://doi.org/10.3389/fneur.2022.890638.
2022-2022: [1] MINTAEV, R. R. - GLAZKOVA, D. V. - BOGOSLOVSKAYA, E. V. - SHIPULIN, G. A. Immunogenic epitope prediction to create a universal influenza vaccine. In HELIYON, 2022, vol. 8, no. 5, pp. Dostupné na: https://doi.org/10.1016/j.heliyon.2022.e09364.
2022-2022: [1] MOZAFARI, Atena - AMANI, Jafar - SHAHSAVANDI, Shahla - SALMANIAN, Ali Hatef. A Novel Multi-Epitope Edible Vaccine Candidate for Newcastle Disease Virus: In Silico Approach. In IRANIAN JOURNAL OF BIOTECHNOLOGY. ISSN 1728-3043, 2022, vol. 20, no. 2, pp. Dostupné na: https://doi.org/10.30498/ijb.2022.298822.3119.
2022-2022: [1] MU, Yi - GORDON, Catherine A. - OLVEDA, Remigio M. - ROSS, Allen G. - OLVEDA, David U. - MARSH, Jessica M. - MCMANUS, Donald P. - CAIID, Pengfei. Identification of a linear B-cell epitope on the Schistosoma japonicum saposin protein, SjSAP4: Potential as a component of a multi-epitope diagnostic assay. In PLoS Neglected Tropical Diseases, 2022-01-01, 16, 7, pp. ISSN 19352727. Dostupné na: https://doi.org/10.1371/JOURNAL.PNTD.0010619.
2022-2022: [1] MUFIDA, Diana C. - PERWITASARI, Rahma - AGUSTINA, Dini - SHODIKIN, Muhammad A. - SUSWATI, Enny. Characterization of Pili Protein 67 kDa Streptococcus pneumoniae: New Candidate for Virulence Factor-Based Pneumococcal Antigen Vaccine. In PROTEIN AND PEPTIDE LETTERS, 2022, vol. 29, no. 8, pp. 702-710. ISSN 0929-8665. Dostupné na: https://doi.org/10.2174/0929866529666220707142232.
2022-2022: [1] NEMA, Shrikant - KRISHNA, Sri - TIWARI, Archana - BHARTI, Praveen Kumar. Limited genetic diversity and expression profile of Plasmodium falciparum haem detoxification protein: a possible diagnostic target. In TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE, 2022, vol. 116, no. 12, pp. 1162-1171. ISSN 0035-9203. Dostupné na: https://doi.org/10.1093/trstmh/trac055.
2022-2022: [1] SAHU, Tanmaya Kumar - MEHER, Prabina Kumar - CHOUDHURY, Nalini Kanta - RAO, Atmakuri Ramakrishna. A comparative analysis of amino acid encoding schemes for the prediction of flexible length linear B-cell epitopes. In BRIEFINGS IN BIOINFORMATICS, 2022, vol. 23, no. 5, pp. ISSN 1467-5463. Dostupné na: https://doi.org/10.1093/bib/bbac356.
2022-2022: [1] SANKARALINGAM, Subikshaa - PARTHASARATHY, Sathishnath - NANDAMURI, Chethan Jaya Sai - RAMANATHAN, Shruti - SUGUMAR, Shobana. Identification of Potential Immunogenic Epitopes Against SARS-CoV-2 Using In-Silico Method: An Immunoinformatics Study. In CURRENT PROTEOMICS, 2022, vol. 19, no. 4, pp. 357-369. ISSN 1570-1646. Dostupné na: https://doi.org/10.2174/1570164619666220401115509.
2022-2022: [1] SELLARS, MacLean C. - WU, Catherine J. - FRITSCH, Edward F. Review Cancer vaccines: Building a bridge over troubled waters. In CELL, 2022, vol. 185, no. 15, pp. 2770-2788. ISSN 0092-8674. Dostupné na: https://doi.org/10.1016/j.cell.2022.06.035.
2022-2022: [1] SONG, Ruiqi - ZHAI, Xuejie - FAN, Xinli - LI, Yongchang - HUERCHA - GE, Ting - LI, Caishan - LI, Min - HE, Wenwen - ZHENG, Huizhen - GAN, Lu - ZHANG, Yang - CHAHAN, Bayin. Prediction and validation of cross-protective candidate antigen of Hyalomma asiaticum cathepsin L between H. asiaticum and H. anatolicum. In EXPERIMENTAL AND APPLIED ACAROLOGY. ISSN 0168-8162, 2022, vol. 86, no. 2, pp. 283-298. Dostupné na: https://doi.org/10.1007/s10493-022-00689-9.
2022-2022: [1] SUPRUN, Maria - SICHERER, Scott H. - WOOD, Robert A. - JONES, Stacie M. - LEUNG, Donald Y. M. - BURKS, A. Wesley - DUNKIN, David - WITMER, Marc - GRISHINA, Galina - GETTS, Robert - SUAREZ-FARINAS, Mayte - SAMPSON, Hugh A. Mapping Sequential IgE-Binding Epitopes on Major and Minor Egg Allergens. In INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY, 2022, vol. 183, no. 3, pp. 249-261. ISSN 1018-2438. Dostupné na: https://doi.org/10.1159/000519618.
2022-2022: [1] WANG, Kai - CREVEL, Rene W. R. - MILLS, E. N. Clare. Assessing protein digestibility in allergenicity risk assessment: A comparison of in silico and high throughput in vitro gastric digestion assays. In FOOD AND CHEMICAL TOXICOLOGY, 2022, vol. 167, no., pp. ISSN 0278-6915. Dostupné na: https://doi.org/10.1016/j.fct.2022.113273.
2022-2022: [1] WANG, Pan - DING, Peiyang - WEI, Qiang - LIU, Hongliang - LIU, Yunchao - LI, Qingmei - XING, Yunrui - LI, Ge - ZHOU, Enmin - ZHANG, Gaiping. Precise location of two novel linear epitopes on the receptor-binding domain surface of MERS-CoV spike protein recognized by two different monoclonal antibodies. In INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES. ISSN 0141-8130, 2022, vol. 195, no., pp. 609-619. Dostupné na: https://doi.org/10.1016/j.ijbiomac.2021.11.192.
2022-2022: [1] WAURY, Katharina - WILLEMSE, Eline A. J. - VANMECHELEN, Eugeen - ZETTERBERG, Henrik - TEUNISSEN, Charlotte E. - ABELN, Sanne. Bioinformatics tools and data resources for assay development of fluid protein biomarkers. In BIOMARKER RESEARCH, 2022, vol. 10, no. 1, pp. Dostupné na: https://doi.org/10.1186/s40364-022-00425-w.
2022-2022: [1] XU, Haodong - ZHAO, Zhongming. NetBCE: An Interpretable Deep Neural Network for Accurate Prediction of Linear B-cell Epitopes. In GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, vol. 20, no. 5, pp. 1002-1012. ISSN 1672-0229. Dostupné na: https://doi.org/10.1016/j.gpb.2022.11.009.
2022-2022: [1] YIN, Rui - ZHU, Xianghe - ZENG, Min - WU, Pengfei - LI, Min - KWOH, Chee Keong. A framework for predicting variable-length epitopes of human-adapted viruses using machine learning methods. In BRIEFINGS IN BIOINFORMATICS, 2022, vol. 23, no. 5, pp. ISSN 1467-5463. Dostupné na: https://doi.org/10.1093/bib/bbac281.
2022-2022: [1] YU, Ruisong - DONG, Shijuan - CHEN, Bingqing - LIU, Yingjie - LI, Fengping - SI, Fusheng - XIE, Chunfang - LI, Zhen. Antigenicity Alternations of Variant PEDV S Protein Disclosed by Linear B Cell Epitope Mapping. In VIRUSES-BASEL, 2022, vol. 14, no. 7, pp. Dostupné na: https://doi.org/10.3390/v14071371.
2022-2022: [1] YUSUFU, Meilipaiti - ABULA, Ayipairi - JIANG, Boyong - ZHUMABAI, Jiayinaguli - DENG, Fei - LI, Yijie - ZHANG, Yujiang - DING, Juntao - SUN, Surong. Fine mapping of the antigenic epitopes of the Gc protein of Guertu virus. In PLOS ONE, 2022, vol. 17, no. 7, pp. ISSN 1932-6203. Dostupné na: https://doi.org/10.1371/journal.pone.0271878.
2022-2022: [1] ZHOU, Jiahuan - CHEN, Jiayi - PENG, Yunchi - XIE, Yafeng - XIAO, Yongjian. A Promising Tool in Serological Diagnosis: Current Research Progress of Antigenic Epitopes in Infectious Diseases. In PATHOGENS, 2022, vol. 11, no. 10, pp. Dostupné na: https://doi.org/10.3390/pathogens11101095.
2022-2022: [1] ZIEREP, Paul F. - VITA, Randi - BLAZESKA, Nina - MOUMBOCK, Aurelien F. A. - GREENBAUM, Jason A. - PETERS, Bjoern - GUENTHER, Stefan. Towards the prediction of non-peptidic epitopes. In PLOS COMPUTATIONAL BIOLOGY. ISSN 1553-734X, 2022, vol. 18, no. 2, pp. Dostupné na: https://doi.org/10.1371/journal.pcbi.1009151.
2021-2021: [3] AHMED, R.A. - ALMOFTI, Y.A. - ABD-ELRAHMAN, K.A. Structural Analysis of the Polymerase Protein for Multiepitopes Vaccine Prediction against Hepatitis B Virus. In Biosciences Biotechnology Research Asia. ISSN 0973-1245. Vol. 18, no. 1 (2021), p. 125-146.
2021-2021: [1] AHN, Woo-Sung - KIM, Tae-Sung - PARK, Yong Jun - PARK, Young Kwang - KIM, Hag Dong - KIM, Joon. Production, characterization, and epitope mapping of monoclonal antibodies of ribosomal protein S3 (rpS3). In ANIMAL CELLS AND SYSTEMS. ISSN 1976-8354, 2021, vol. 25, no. 5, pp. 323-336. [WoS]
2021-2021: [1] ARYA, Hemant - BHATT, Tarun Kumar. Role of Bioinformatics in Subunit Vaccine Design. In Molecular Docking for Computer-Aided Drug Design: Fundamentals, Techniques, Resources and Applications, 2021-01-01, pp. 425-439. Dostupné na: https://doi.org/10.1016/B978-0-12-822312-3.00013-8.
2021-2021: [1] ASHFORD, Jodie - REIS-CUNHA, Joao - LOBO, Igor - LOBO, Francisco - CAMPELO, Felipe. Organism-specific training improves performance of linear B-cell epitope prediction. In BIOINFORMATICS. ISSN 1367-4803, 2021, vol. 37, no. 24, pp. 4826-4834. Dostupné na: https://doi.org/10.1093/bioinformatics/btab536. [WoS]
2021-2021: [1] ASHKENAZY, Haim - AVRAM, Oren - RYVKIN, Arie - ROITBURD-BERMAN, Anna - WEISS-OTTOLENGHI, Yael - HADA-NEEMAN, Smadar - GERSHONI, Jonathan M. - PUPKO, Tal. Motifier: An IgOme Profiler Based on Peptide Motifs Using Machine Learning. In JOURNAL OF MOLECULAR BIOLOGY. ISSN 0022-2836, 2021, vol. 433, no. 15, pp. [WoS]
2021-2021: [1] BAHAI, Akash - ASGARI, Ehsaneddin - MOFRAD, Mohammad R. K. - KLOETGEN, Andreas - MCHARDY, Alice C. EpitopeVec: linear epitope prediction using deep protein sequence embeddings. In BIOINFORMATICS. ISSN 1367-4803, 2021, vol. 37, no. 23, pp. 4517-4525. Dostupné na: https://doi.org/10.1093/bioinformatics/btab467. [WoS]
2021-2021: [1] BODDAKAYALA, Namratha - BODIGA, Sreedhar - BODIGA, Vijaya Lakshmi - TUMMALA, Pavan Kumar - VEMURU, Srikanth - SETTI, Rajeswari - MANNE, Anupama Ammulu - VEERAVILLI, Suryanarayana - VEMURI, Praveen Kumar. Conformational Epitope Prediction of Birch Betv 1 and Hazel Cor A1 Towards B-Cells. In JOURNAL OF PHARMACEUTICAL RESEARCH INTERNATIONAL. ISSN 2456-9119, 2021, vol. 33, no. 28A, pp. 146-159. [WoS]
2021-2021: [1] CAOILI, Salvador Eugenio C. Beyond B-Cell Epitopes: Curating Positive Data on Antipeptide Paratope Binding to Support Peptide-Based Vaccine Design. In PROTEIN AND PEPTIDE LETTERS. ISSN 0929-8665, 2021, vol. 28, no. 8, pp. 953-962. [WoS]
2021-2021: [1] CHEN, Yi-Yu - LI, Meng-Si - LIU, Meng - YUN, Xiao - HUAN, Fei - LIU, Qing-Mei - CAO, Min-Jie - CHEN, Gui-Xia - LAI, Dong - LIU, Guang-Ming. Linear Epitopes Play an Important Role in the Immunoglobulin G (IgG)/Immunoglobulin E (IgE)-Binding Capacity of Scy p 4. In JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. ISSN 0021-8561, 2021, vol. 69, no. 43, pp. 12870-12879. [WoS]
2021-2021: [1] DAR, Hamza Arshad - ISMAIL, Saba - WAHEED, Yasir - AHMAD, Sajjad - JAMIL, Zubia - AZIZ, Hafsa - HETTA, Helal F. - MUHAMMAD, Khalid. Designing a multi-epitope vaccine against Mycobacteroides abscessus by pangenome-reverse vaccinology. In SCIENTIFIC REPORTS. ISSN 2045-2322, 2021, vol. 11, no. 1, pp. [WoS]
2021-2021: [1] EKEZIE, Flora Glad C. - AHMED, Ishfaq - UDENIGWE, Chibuike C. - LI, Zhenxing. CHAPTER 3: Food Protein Allergenicity: Characterization, Epitope Mapping and Deactivation. In Food Chemistry, Function and Analysis. ISSN 23980656, 2021-01-01, 2021-January, 27, pp. 58-96. [Scopus]
2021-2021: [1] FORNER, Mar - CANAS-ARRANZ, Rodrigo - DEFAUS, Sira - DE LEON, Patricia - RODRIGUEZ-PULIDO, Miguel - GANGES, Llilianne - BLANCO, Esther - SOBRINO, Francisco - ANDREU, David. Peptide-Based Vaccines: Foot-and-Mouth Disease Virus, a Paradigm in Animal Health. In VACCINES, 2021, vol. 9, no. 5, pp. [WoS]
2021-2021: [1] GARZON, Thania - ORTEGA-TIRADO, David - LOPEZ-ROMERO, Gloria - ALDAY, Efrain - ROBLES-ZEPEDA, Ramón Enrique - GARIBAY-ESCOBAR, Adriana - VELAZQUEZ, Carlos. “Immunoinformatic Identification of T-Cell and B-Cell Epitopes From Giardia lamblia Immunogenic Proteins as Candidates to Develop Peptide-Based Vaccines Against Giardiasis”. In Frontiers in Cellular and Infection Microbiology, 2021-10-27, 11, pp. [Scopus]
2021-2021: [1] GONZAGA, Zennia Jean C. - CHEN, Shuxiong - LEHOUX, Melanie - SEGURA, Mariela - REHM, Bernd H. A. Engineering Antigens to Assemble into Polymer Particle Vaccines for Prevention of Streptococcus suis Infection. In VACCINES, 2021, vol. 9, no. 12, pp. Dostupné na: https://doi.org/10.3390/vaccines9121386. [WoS]
2021-2021: [1] GONZALEZ-RUIZ, Azahara - ANGELES LOPEZ-MATAS, M. - MOYA, Raquel - CARNES, Jeronimo. Immunoinformatic epitope prediction to select monoclonal antibodies for Phl p 1 quantification. In MOLECULAR IMMUNOLOGY. ISSN 0161-5890, 2021, vol. 136, no., pp. 1-7. [WoS]
2021-2021: [1] HAKIM, Jill M. C. - YANG, Zhenhua. Predicted Structural Variability of Mycobacterium tuberculosis PPE18 Protein With Immunological Implications Among Clinical Strains. In FRONTIERS IN MICROBIOLOGY. ISSN 1664-302X, 2021, vol. 11, no., pp. [WoS]
2021-2021: [1] HOQUE, Hammadul - ISLAM, Rahatul - GHOSH, Srijon - RAHAMAN, Md. Mashiur - JEWEL, Nurnabi Azad - MIAH, Md. Abunasar. Implementation of in silico methods to predict common epitopes for vaccine development against Chikungunya and Mayaro viruses. In HELIYON, 2021, vol. 7, no. 3, pp. [WoS]
2021-2021: [1] HOU, Qingzhen - STRINGER, Bas - WAURY, Katharina - CAPEL, Henriette - HAYDARLOU, Reza - XUE, Fuzhong - ABELN, Sanne - HERINGA, Jaap - FEENSTRA, K. Anton. SeRenDIP-CE: sequence-based interface prediction for conformational epitopes. In BIOINFORMATICS. ISSN 1367-4803, 2021, vol. 37, no. 20, pp. 3421-3427. Dostupné na: https://doi.org/10.1093/bioinformatics/btab321. [WoS]
2021-2021: [1] HSUEH, Fu-Chun - HSU, Feng-Yang - CHEN, Yu-Hsuan - SHIH, Hsing-Chun - LIN, Wei-Hao - YANG, Cheng-Yao - LIN, Chuen-Fu - CHIOU, Ming-Tang - LIN, Chao-Nan. Phylogenetic Classification of Global Porcine Deltacoronavirus (PDCoV) Reference Strains and Molecular Characterization of PDCoV in Taiwan. In VIRUSES-BASEL, 2021, vol. 13, no. 7, pp. [WoS]
2021-2021: [1] HU, Yongxin - LI, Xin - CHENG, Jianfeng - MA, Xin - MENG, Xuanyi - CHEN, Hongbing - WU, Yong. Advances in Food Allergen Epitope Localization Technologies. In Shipin Kexue/Food Science. ISSN 10026630, 2021-04-15, 42, 7, pp. 292-300. [Scopus]
2021-2021: [1] HUANG, Wanzhi - SOEUNG, Victoria - BORAGINE, David M. - HU, Liya - PRASAD, B. V. Venkataram - ESTES, Mary K. - ATMAR, Robert L. - PALZKILL, Timothy. High-Resolution Mapping of Human Norovirus Antigens via Genomic Phage Display Library Selections and Deep Sequencing. In JOURNAL OF VIROLOGY. ISSN 0022-538X, 2021, vol. 95, no. 1, pp. [WoS]
2021-2021: [1] JAISWAL, Grijesh - YADUVANSHI, Shivani - KUMAR, Veerendra. A potential peptide inhibitor of SARS-CoV-2 S and human ACE2 complex. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. ISSN 0739-1102, 2021, vol., no., pp. [WoS]
2021-2021: [1] KESHTVARZ, Maryam - MAHBOOBI, Mahdieh - KIELISZEK, Marek - MIECZNIKOWSKI, Antoni - SEDIGHIAN, Hamid - REZAEI, Milad - HAGHIGHI, Mohammad Ali - ZAREH, Zahra - REZAEI, Ehsan. Engineering of Cytolethal Distending Toxin B by Its Reducing Immunogenicity and Maintaining Stability as a New Drug Candidate for Tumor Therapy; an In Silico Study. In TOXINS, 2021, vol. 13, no. 11, pp. [WoS]
2021-2021: [1] KUMARI, Kriti - UTTAM, Gunjan - SINGH, Karuna - KUMARI, Ankita - TIRKEY, Neha Nidhi. In-silico Studies on Virulence Factors of Cryptococcus Species: Phylogenetic Analysis and B-cell Epitope Prediction. In BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY. ISSN 2069-5837, 2021, vol. 11, no. 6, pp. 14775-14793. [WoS]
2021-2021: [1] KUMARI, Kriti - UTTAM, Gunjan - SINGH, Karuna - KUMARI, Ankita - TIRKEY, Neha Nidhi. In-silico Studies on Virulence Factors of Cryptococcus Species: Phylogenetic Analysis and B-cell Epitope Prediction. In BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY. ISSN 2069-5837, 2021, vol. 11, no. 6, pp. 14775-14793. Dostupné na: https://doi.org/10.33263/BRIAC116.1477514793. [WoS]
2021-2021: [1] LIM, Li Cen - LIM, Yee Ying - CHOONG, Yee Siew. Data curation to improve the pattern recognition performance of B-cell epitope prediction by support vector machine. In PURE AND APPLIED CHEMISTRY. ISSN 0033-4545, 2021, vol. 93, no. 5, pp. 571-577. [WoS]
2021-2021: [1] LIN, Jianli - HUANG, Nana - LI, Jing - LIU, Xiaoyu - XIONG, Qing - HU, Chengshen - CHEN, Desheng - GUAN, Lvxin - CHANG, Kexin - LI, Dan - TSUI, Stephen Kwok-Wing - ZHONG, Nanshan - LIU, Zhigang - YANG, Ping-Chang. Cross-reactive antibodies against dust mite-derived enolase induce neutrophilic airway inflammation. In EUROPEAN RESPIRATORY JOURNAL. ISSN 0903-1936, 2021, vol. 57, no. 1, pp. [WoS]
2021-2021: [1] LO, Ying-Tsang - SHIH, Tao-Chuan - PAI, Tun-Wen - HO, Li-Ping - WU, Jen-Leih - CHOU, Hsin-Yiu. Conformational epitope matching and prediction based on protein surface spiral features. In BMC GENOMICS. ISSN 1471-2164, 2021, vol. 22, no. SUPPL 2, pp. [WoS]
2021-2021: [1] MATHARU, Zimple - BEE, Christine - SCHWARZ, Flavio - CHEN, Haibin - TOMLINSON, Matthew - WU, Gabriel - RAKESTRAW, Ginger - HORNSBY, Michael - DRAKE, Andrew - STROP, Pavel - RAJPAL, Arvind - DOLLINGER, Gavin. High-Throughput Surface Plasmon Resonance Biosensors for Identifying Diverse Therapeutic Monoclonal Antibodies. In ANALYTICAL CHEMISTRY. ISSN 0003-2700, 2021, vol. 93, no. 49, pp. 16474-16480. Dostupné na: https://doi.org/10.1021/acs.analchem.1c03548.
2021-2021: [1] PAMBUDI, S. - IRAWAN, D. - DANNY, A. - WIDAYANTI, T. - TARWADI. Computational antigenic epitope prediction of clinical Indonesian Dengue virus NS1 protein. In IOP Conference Series: Earth and Environmental Science. ISSN 17551307, 2021-12-16, 948, 1, pp. Dostupné na: https://doi.org/10.1088/1755-1315/948/1/012080. [Scopus]
2021-2021: [1] PAPAGEORGIOU, Ismini - BITTNER, Daniel - PSYCHOGIOS, Marios Nikos - HADJIDEMETRIOU, Stathis. Brain immunoinformatics: A symmetrical link between informatics, wet lab and the clinic. In Symmetry, 2021-11-01, 13, 11, pp. [Scopus]
2021-2021: [1] PINHEIRO-JUNIOR, Ernesto Lopes - BOLDRINI-FRANCA, Johara - SEKIJIMA TAKEDA, Agnes Alessandra - COSTA, Tassia Rafaella - PEIGNEUR, Steve - CARDOSO, Iara Aime - DE OLIVEIRA, Isadora Sousa - SAMPAIO, Suely Vilela - DE MATTOS FONTES, Marcos Roberto - TYTGAT, Jan - ARANTES, Eliane Candiani. Towards toxin PEGylation: The example of rCollinein-1, a snake venom thrombin-like enzyme, as a PEGylated biopharmaceutical prototype. In INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES. ISSN 0141-8130, 2021, vol. 190, no., pp. 564-573. [WoS]
2021-2021: [1] RANTAM, Fedik Abdul - KHARISMA, Viol Dhea - SUMARTONO, Christrijogo - NUGRAHA, Jusak - WIJAYA, Andi Yasmin - SUSILOWATI, Helen - KUNCOROJAKTI, Suryo - NUGRAHA, Alexander Patera. Molecular docking and dynamic simulation of conserved B cell epitope of SARS-CoV-2 glycoprotein Indonesian isolates: An immunoinformatic approach. In F1000Research. ISSN 20461402, 2021-01-01, 10, pp. Dostupné na: https://doi.org/10.12688/f1000research.54258.1. [Scopus]
2021-2021: [1] RAS-CARMONA, Alvaro - PELAEZ-PRESTEL, Hector F. - LAFUENTE, Esther M. - RECHE, Pedro A. Bceps: A web server to predict linear b cell epitopes with enhanced immunogenicity and cross-reactivity. In Cells, 2021-10-01, 10, 10, pp. [Scopus]
2021-2021: [1] SÁNCHEZ-BURGOS, Gilma G. - MONTALVO-MARIN, Nallely M. - DÍAZ-ROSADO, Edgar R. - PÉREZ-RUEDA, Ernesto. In silico identification of chikungunya virus b-and t-cell epitopes with high antigenic potential for vaccine development. In Viruses, 2021-11-01, 13, 12, pp. Dostupné na: https://doi.org/10.3390/v13122360. [Scopus]
2021-2021: [1] SHEY, Robert Adamu - GHOGOMU, Stephen Mbigha - SHINTOUO, Cabirou Mounchili - NKEMNGO, Francis Nongley - NEBANGWA, Derrick Neba - ESOH, Kevin - YAAH, Ntang Emmaculate - MANKA'AFRI, Muyanui - NGUVE, Joel Ebai - NGWESE, Roland Akwelle - NJUME, Ferdinand Ngale - BERTHA, Fru Asa - AYONG, Lawrence - NJEMINI, Rose - VANHAMME, Luc - SOUOPGUI, Jacob. Computational Design and Preliminary Serological Analysis of a Novel Multi-Epitope Vaccine Candidate Against Onchocerciasis and Related Filarial Diseases. In PATHOGENS, 2021, vol. 10, no. 2, pp. [WoS]
2021-2021: [1] SOARES, Bruno Araujo - TEIXEIRA, Kadima Nayara - SANTANA, Juliana Ferreira de - ASSIS, Bianca Luiza Melo de - ZOCATELLI-RIBEIRO, Cristiane - SCANDELARI, Paulo Stanke - THOMAZ-SOCCOL, Vanete - MACHADO-DE-, Ricardo Andrez - ALVARENGA, Larissa Magalhaes - DE MOURA, Juliana. Epitope mapping from Mycobacterium leprae proteins: Convergent data from in silico and in vitro approaches for serodiagnosis of leprosy. In MOLECULAR IMMUNOLOGY. ISSN 0161-5890, 2021, vol. 138, no., pp. 48-57. [WoS]
2021-2021: [1] SRIVASTAVA, Shivani - SHARMA, Suraj Kumar - SRIVASTAVA, Vivek - KUMAR, Ajay. Proteomic Exploration of Listeria monocytogenes for the Purpose of Vaccine Designing Using a Reverse Vaccinology Approach. In INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS. ISSN 1573-3149, 2021, vol. 27, no. 1, pp. 779-799. [WoS]
2021-2021: [1] TAHERI-ANGANEH, Mortaza - SAVARDASHTAKI, Amir - VAFADAR, Asma - MOVAHEDPOUR, Ahmad - SHABANINEJAD, Zahra - MALEKSABET, Amir - AMIRI, Ahmad - GHASEMI, Younes - IRAJIE, Cambyz. In Silico Design and Evaluation of PRAME+FliC Delta D2D3 as a New Breast Cancer Vaccine Candidate. In IRANIAN JOURNAL OF MEDICAL SCIENCES. ISSN 0253-0716, 2021, vol. 46, no. 1, pp. 52-60. [WoS]
2021-2021: [1] TAHIR, Shifa - BOURQUARD, Thomas - MUSNIER, Astrid - JULLIAN, Yann - CORDE, Yannick - OMAHDI, Zakaria - MATHIAS, Laetitia - REITER, Eric - CREPIEUX, Pascale - BRUNEAU, Gilles - POUPON, Anne. Accurate determination of epitope for antibodies with unknown 3D structures. In MABS. ISSN 1942-0862, 2021, vol. 13, no. 1, pp. [WoS]
2021-2021: [1] TAKEI, Junko - ASANO, Teizo - LI, Guanjie - SAITO, Masaki - SUZUKI, Hiroyuki - KANEKO, Mika K. - KATO, Yukinari. Epitope Mapping of an Anti-Human CCR9 Monoclonal Antibody (C<inf>9</inf>Mab-1) Using Enzyme-Linked Immunosorbent Assay. In Monoclonal Antibodies in Immunodiagnosis and Immunotherapy, 2021-12-01, 40, 6, pp. 239-242. Dostupné na: https://doi.org/10.1089/mab.2021.0037. [Scopus]
2021-2021: [1] TAKEI, Junko - SUZUKI, Hiroyuki - ASANO, Teizo - LI, Guanjie - SAITO, Masaki - KANEKO, Mika K. - KATO, Yukinari. Epitope Mapping of an Anti-CD20 Monoclonal Antibody (C<inf>20</inf>Mab-60) Using Enzyme-Linked Immunosorbent Assay. In Monoclonal Antibodies in Immunodiagnosis and Immunotherapy, 2021-12-01, 40, 6, pp. 250-254. Dostupné na: https://doi.org/10.1089/mab.2021.0042. [Scopus]
2021-2021: [1] WAKEMAN, B. S. - SHAKAMURI, P. - MCDONALD, M. A. - WEINBERG, J. - SVOBODA, P. - MURPHY, M. K. - KARIUKI, S. - MACE, K. - ELDER, E. - RIVERA, H. - QVARNSTROM, Y. - POHL, J. - SHI, Y. P. Development of a new peptide-bead coupling method for an all peptide-based Luminex multiplexing assay for detection of Plasmodium falciparum antibody responses. In JOURNAL OF IMMUNOLOGICAL METHODS. ISSN 0022-1759, 2021, vol. 499, no., pp. [WoS]
2021-2021: [1] XU, Li Li - GASSET, Maria - LIN, Hong - YU, Chuang - ZHAO, Jin Long - DANG, Xue Wen - LI, Zhen Xing. Identification of the Dominant T-Cell Epitopes of Lit v 1 Shrimp Major Allergen and Their Functional Overlap with Known B-Cell Epitopes. In JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. ISSN 0021-8561, 2021, vol. 69, no. 26, pp. 7420-7428. [WoS]
2020-2020: [1] CAMPERI, Silvia A. - ACOSTA, Gerardo - BARREDO, Gabriela R. - IGLESIAS-GARCÍA, Lucía C. - ALVES DA SILVA CALDEIRA, Cleópatra - MARTÍNEZ-CERON, María C. - GIUDICESSI, Silvana L. - CASCONE, Osvaldo - ALBERICIO, Fernando. Synthetic peptides to produce antivenoms against the Cys-rich toxins of arachnids. In Toxicon: X, 2020-06-01, 6, pp. [Scopus]
2020-2020: [1] CORRAL-LUGO, Andrés - LÓPEZ-SILES, Mireia - LÓPEZ, Daniel - MCCONNELL, Michael J. - MARTIN-GALIANO, Antonio J. Identification and analysis of unstructured, linear b-cell epitopes in SARS-CoV-2 virion proteins for vaccine development. In Vaccines, 2020-09-01, 8, 3, pp. 1-21. [Scopus]
2020-2020: [1] DUKE, Brian R. - MITRA-KAUSHIK, Shibani. Current In Vitro Assays for Prediction of T Cell Mediated Immunogenicity of Biotherapeutics and Manufacturing Impurities. In Journal of Pharmaceutical Innovation. ISSN 18725120, 2020-06-01, 15, 2, pp. 202-218. [Scopus]
2020-2020: [1] FU, Jiayu - CHEN, Rui - HU, Jingfei - QU, Huan - ZHAO, Yujia - CAO, Sanjie - WEN, Xintian - WEN, Yiping - WU, Rui - ZHAO, Qin - MA, Xiaoping - HUANG, Xiaobo. Identification of a Novel Linear B-Cell Epitope on the Nucleocapsid Protein of Porcine Deltacoronavirus. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, vol. 21, no. 2, pp. [WoS]
2020-2020: [1] HERRERA BELEN, Lisandra - BELTRAN LISSABET, Jorge F. - RANGEL-YAGUI, Carlota de Oliveira - MONTEIRO, Gisele - PESSOA, Adalberto - FARIAS, Jorge G. Immunogenicity assessment of fungal L-asparaginases: an in silico approach. In SN APPLIED SCIENCES. ISSN 2523-3963, 2020, vol. 2, no. 2, pp. [WoS]
2020-2020: [1] HU, Ercha - MA, Ying - HAO, Yunwei - LI, Min - HU, Zhengxiang - SONG, Ruiqi - WEI, Liting - FAN, Shilong - CHEN, Songqin - FAN, Xinli - ZHAI, Xuejie - GUO, Qingyong - BAYIN, Chahan. Sequence identification and expression profile of sevenDermacentor marginatusglutathione S-transferase genes. In EXPERIMENTAL AND APPLIED ACAROLOGY. ISSN 0168-8162, 2020, vol., no., pp. [WoS]
2020-2020: [1] JIANG, Min - GUO, Junqing - ZHANG, Gaiping - JIN, Qianyue - LIU, Yankai - JIA, Rui - WANG, Aiping. Fine mapping of linear B cell epitopes on capsid protein of porcine circovirus 3. In APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. ISSN 0175-7598, 2020, vol. 104, no. 14, pp. 6223-6234. [WoS]
2020-2020: [1] KALITA, Jupitara - PADHI, Aditya K. - TRIPATHI, Timir. Designing a vaccine for fascioliasis using immunogenic 24 kDa muclass glutathione s-transferase. In INFECTION GENETICS AND EVOLUTION. ISSN 1567-1348, 2020, vol. 83, no., pp. [WoS]
2020-2020: [1] KARADAG, Murat - ARSLAN, Merve - KALELI, Nazli Eda - KALYONCU, Sibel. Physicochemical determinants of antibody-protein interactions. In Advances in Protein Chemistry and Structural Biology. ISSN 18761623, 2020-01-01, 121, pp. 85-114. [Scopus]
2020-2020: [1] KERKHOF, Karen - FALCONI-AGAPITO, Francesca - VAN ESBROECK, Marjan - TALLEDO, Michael - ARIËN, Kevin K. Reliable Serological Diagnostic Tests for Arboviruses: Feasible or Utopia? In Trends in Microbiology. ISSN 0966842X, 2020-04-01, 28, 4, pp. 276-292. [WoS]
2020-2020: [1] KHALID, Hina - ASHFAQ, Usman Ali. Exploring HCV genome to construct multi-epitope based subunit vaccine to battle HCV infection: Immunoinformatics based approach. In Journal of Biomedical Informatics. ISSN 15320464, 2020-08-01, 108, pp. [Scopus]
2020-2020: [1] KUMAR, Burranboina Kiran - KUMAR, K. M. - REDDY, G. B. Manjunatha - ABRAHAM, Sunil - YOGISHARADHYA, R. - PRASHANTHA, C. N. Molecular Modelling and Insilico Engineering of PapMV-CP Towards Display and Development of Capripox Viral Like Particles Based on Immunogenic P32 Envelop Protein is the Homologous of the Vaccinia-Viral H3L Gene: An Insilico Approach. In INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS. ISSN 1573-3149, 2020, vol. 26, no. 4, pp. 2155-2167. [WoS]
2020-2020: [1] KUSHWAHA, Sandeep Kumar - KESARWANI, Veerbhan - CHOUDHURY, Samraggi - GANDHI, Sonu - SHARMA, Shailesh. SARS-CoV-2 transcriptome analysis and molecular cataloguing of immunodominant epitopes for multi-epitope based vaccine design. In GENOMICS. ISSN 0888-7543, 2020, vol. 112, no. 6, pp. 5044-5054. [WoS]
2020-2020: [1] LIU, Tao - SHI, Kaiwen - LI, Wuju. Deep learning methods improve linear B-cell epitope prediction. In BIODATA MINING. ISSN 1756-0381, 2020, vol. 13, no. 1, pp. [WoS]
2020-2020: [1] LLANES, Alejandro - RESTREPO, Carlos M. - CABALLERO, Zuleima - RAJEEV, Sreekumari - KENNEDY, Melissa A. - LLEONART, Ricardo. BetacoronavirusGenomes: How Genomic Information has been Used to Deal with Past Outbreaks and the COVID-19 Pandemic. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, vol. 21, no. 12, pp. [WoS]
2020-2020: [1] MITTAL, Ayushi - SASIDHARAN, Santanu - RAJ, Shweta - BALAJI, S. N. - SAUDAGAR, Prakash. Exploring the Zika Genome to Design a Potential Multiepitope Vaccine Using an Immunoinformatics Approach. In INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS. ISSN 1573-3149, 2020, vol., no., pp. [WoS]
2020-2020: [1] MUSTAFA, Suhaili - ABD-AZIZ, Noraini - SAW, Wuan-Ting - LIEW, Sien-Yei - YUSOFF, Khatijah - SHAFEE, Norazizah. Recombinant Enterovirus 71 Viral Protein 1 Fused to a Truncated Newcastle Disease Virus NP (NPt) Carrier Protein. In VACCINES, 2020, vol. 8, no. 4, pp. [WoS]
2020-2020: [1] NDAWULA JR., Charles - XAVIER, Marina Amaral - VILLAVICENCIO, Bianca - LOPES, Fernanda Cortez - JULIANO, Maria Aparecida - PARIZI, Luis Fernando - VERLI, Hugo - VAZ JR., Itabajara da Silva - LIGABUE-BRAUN, Rodrigo. Prediction, mapping and validation of tick glutathione S-transferase B-cell epitopes. In TICKS AND TICK-BORNE DISEASES. ISSN 1877-959X, 2020, vol. 11, no. 4, pp. [WoS]
2020-2020: [1] NELAPATI, Anand Kumar - DAS, Bratin Kumar - ETTIYAPPAN, Jagadeesh Babu Ponnan - CHAKRABORTY, Debashree. In-silico epitope identification and design of Uricase mutein with reduced immunogenicity. In PROCESS BIOCHEMISTRY. ISSN 1359-5113, 2020, vol. 92, no., pp. 288-302. [WoS]
2020-2020: [1] NORMAN, Richard A. - AMBROSETTI, Francesco - BONVIN, Alexandre M. J. J. - COLWELL, Lucy J. - KELM, Sebastian - KUMAR, Sandeep - KRAWCZYK, Konrad. Computational approaches to therapeutic antibody design: established methods and emerging trends. In BRIEFINGS IN BIOINFORMATICS. ISSN 1467-5463, 2020, vol. 21, no. 5, pp. 1549-1567. [WoS]
2020-2020: [1] PANDA, Pritam Kumar - ARUL, Murugan Natarajan - PATEL, Paritosh - VERMA, Suresh K. - LUO, Wei - RUBAHN, Horst-Gunter - MISHRA, Yogendra Kumar - SUAR, Mrutyunjay - AHUJA, Rajeev. Structure-based drug designing and immunoinformatics approach for SARS-CoV-2. In SCIENCE ADVANCES. ISSN 2375-2548, 2020, vol. 6, no. 28, pp. [WoS]
2020-2020: [1] PARVIZPOUR, Sepideh - POURSEIF, Mohammad M. - RAZMARA, Jafar - RAFI, Mohammad A. - OMIDI, Yadollah. Epitope-based vaccine design: a comprehensive overview of bioinformatics approaches. In DRUG DISCOVERY TODAY. ISSN 1359-6446, 2020, vol. 25, no. 6, pp. 1034-1042. [WoS]
2020-2020: [1] PATRA, Prasanta - BHATTACHARYA, Manojit - SHARMA, Ashish Ranjan - GHOSH, Pratik - SHARMA, Garima - PATRA, Bidhan Chandra - MALLICK, Bidyut - LEE, Sang-Soo - CHAKRABORTY, Chiranjib. Identification and Design of a Next-Generation Multi Epitopes Bases Peptide Vaccine Candidate Against Prostate Cancer: An In Silico Approach. In CELL BIOCHEMISTRY AND BIOPHYSICS. ISSN 1085-9195, 2020, vol. 78, no. 4, pp. 495-509. [WoS]
2020-2020: [1] PRITAM, Manisha - SINGH, Garima - SWAROOP, Suchit - KUMAR, Rajnish - SINGH, Satarudra Prakash. Computational approach used for designing of potential b cell epitope based vaccine construct against plasmodium falciparum. In International Journal of Scientific and Technology Research, 2020-03-01, 9, 3, pp. 5657-5664. [Scopus]
2020-2020: [1] PRITAM, Manisha - SINGH, Garima - SWAROOP, Suchit - SINGH, Akhilesh Kumar - PANDEY, Brijesh - SINGH, Satarudra Prakash. A cutting-edge immunoinformatics approach for design of multi-epitope oral vaccine against dreadful human malaria. In INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES. ISSN 0141-8130, 2020, vol. 158, no., pp. 159-179. [WoS]
2020-2020: [1] PRITAM, Manisha - SINGH, Garima - SWAROOP, Suchit - SINGH, Akhilesh Kumar - PANDEY, Brijesh - SINGH, Satarudra Prakash. A cutting-edge immunoinformatics approach for design of multi-epitope oral vaccine against dreadful human malaria. In International Journal of Biological Macromolecules. ISSN 01418130, 2020-09-01, 158, pp. 159-179. [Scopus]
2020-2020: [1] RAOUFI, Ehsan - HEMMATI, Maryam - EFTEKHARI, Samane - KHAKSARAN, Kamal - MAHMODI, Zahra - FARAJOLLAHI, Mohammad M. - MOHSENZADEGAN, Monireh. Epitope Prediction by Novel Immunoinformatics Approach: A State-of-the-art Review. In INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS. ISSN 1573-3149, 2020, vol. 26, no. 2, pp. 1155-1163. [WoS]
2020-2020: [1] RODRIGUES, Anderson Messias - KUBITSCHEK-BARREIRA, Paula Helena - PINHEIRO, Breno Goncalves - TEIXEIRA-FERREIRA, Andre - HAHN, Rosane Christine - DE CAMARGO, Zoilo Pires. Immunoproteomic Analysis Reveals Novel Candidate Antigens for the Diagnosis of Paracoccidioidomycosis Due to Paracoccidioides lutzii. In JOURNAL OF FUNGI, 2020, vol. 6, no. 4, pp. [WoS]
2020-2020: [1] SABATINO, David. Medicinal Chemistry and Methodological Advances in the Development of Peptide-Based Vaccines Miniperspective. In JOURNAL OF MEDICINAL CHEMISTRY. ISSN 0022-2623, 2020, vol. 63, no. 23, pp. 14184-14196. [WoS]
2020-2020: [1] SALAZAR, Cecilia - TORT, José F. - CARMONA, Carlos. Design of a peptide-carrier vaccine based on the highly immunogenic Fasciola hepatica leucine aminopeptidase. In Methods in Molecular Biology. ISSN 10643745, 2020-01-01, 2137, pp. 191-204. [Scopus]
2020-2020: [1] TARANG, Shikha - KESHERWANI, Varun - LATENDRESSE, Blake - LINDGREN, Laramie - ROCHA-SANCHEZ, Sonia M. - WESTON, Michael D. In silico Design of a Multivalent Vaccine Against Candida albicans. In Scientific Reports, 2020-12-01, 10, 1, pp. [Scopus]
2020-2020: [1] TAS, Sevgi Kalkanli - KIRKIK, Duygu - OZTURK, Kubra - TANOGLU, Alpaslan. Determination of B- and T- cell epitopes for Helicobacter pylori cagPAI: An in silico approach. In TURKISH JOURNAL OF GASTROENTEROLOGY. ISSN 1300-4948, 2020, vol. 31, no. 10, pp. 713-720. [WoS]
2020-2020: [1] VERMA, Vikas - JOSHI, Vinay G. - RANJAN, Puneet - TOMAR, Piyush - CHHABRA, Rajesh - MAHAJAN, N. K. - GOEL, Parveen. A bio-safe multiple antigenic peptide (MAP) enzyme-linked immunoassay for the detection of antibodies to infectious bronchitis virus in chickens. In 3 BIOTECH. ISSN 2190-572X, 2020, vol. 10, no. 10, pp. [WoS]
2019-2019: [3] CHEN, J. - LU, H.R. - ZHANG, L. - LIAO, CH.H. - HAN, Q. Bioinformatic prediction of epitopes of the cuticular gene AACPR100A in Aedes agypti. In Chinese Journal of Applied Entomology. ISSN 2095-1353, 2019, vol. 56, no. 2, p. 283-289.
2019-2019: [1] DEMOLOMBE, Vincent - DE BREVERN, Alexandre G. - FELICORI, Liza - NGUYEN, Christophe - MACHADO DE AVILA, Ricardo Andrez - VALERA, Lionel - JARDIN-WATELET, Benedicte - LAVIGNE, Geraldine - LEBRETON, Aurelien - MOLINA, Franck - MOREAU, Violaine. PEPOP 2.0: new approaches to mimic non-continuous epitopes. In BMC BIOINFORMATICS. ISSN 1471-2105, 2019, vol. 20, no., pp. [WoS]
2019-2019: [1] DEMOLOMBE, Vincent - DE BREVERN, Alexandre G. - MOLINA, Franck - LAVIGNE, Geraldine - GRANIER, Claude - MOREAU, Violaine. Benchmarking the PEPOP methods for mimicking discontinuous epitopes. In BMC BIOINFORMATICS. ISSN 1471-2105, 2019, vol. 20, no. 1, pp. [WoS]
2019-2019: [1] DEVI, Sanasam Bijara - KUMAR, Sanjeev. PRE-binding protein of Plasmodium falciparum is a potential candidate for vaccine design and development: An in silico evaluation of the hypothesis. In MEDICAL HYPOTHESES. ISSN 0306-9877, 2019, vol. 125, no., pp. 119-123. [WoS]
2019-2019: [1] DINGMAN, Robert - BALU-IYER, Sathy V. Immunogenicity of Protein Pharmaceuticals. In JOURNAL OF PHARMACEUTICAL SCIENCES. ISSN 0022-3549, 2019, vol. 108, no. 5, pp. 1637-1654. [WoS]
2019-2019: [1] EBRAHIMI, Narjes - NEZAFAT, Navid - ESMAEILZADEH, Hossein - GHASEMI, Younes - NABAVIZADEH, Seyed Hesamodin - ALYASIN, Soheila. In silico prediction of B-cell epitopes for twenty-five mite allergens: The therapeutic potentials for immunotherapy. In MOLECULAR AND CELLULAR PROBES. ISSN 0890-8508, 2019, vol. 46, no., pp. [WoS]
2019-2019: [1] FULTON, Kelly M. - BALTAT, Isabel - TWINE, Susan M. Immunoproteomics Methods and Techniques. In Methods in Molecular Biology. ISSN 10643745, 2019-01-01, 2024, pp. 25-58. [Scopus]
2019-2019: [1] LI, Zhiwei - ZHANG, Fengbo - ZHANG, Chuntao - WANG, Changmin - LU, Peipei - ZHAO, Xiao - HAO, Lijun - DING, Jianbing. Immunoinformatics prediction of OMP2b and BCSP31 for designing multi-epitope vaccine against Brucella. In MOLECULAR IMMUNOLOGY. ISSN 0161-5890, 2019, vol. 114, no., pp. 651-660. [WoS]
2019-2019: [1] MAGALHAES IERICH, Jessica Cristiane - BRUM, Doralina Guimaraes - MORAES, Ariana de Souza - HIGA, Akemi Martins - GARCIA, Pamela Soto - MIYAZAKI, Celina Massumi - FERREIRA, Marystela - PERONI, Luis Antonio - DE OLIVEIRA, Guedmiller Souza - FRANCA, Eduardo de Faria - GOMIDE FREITAS, Luiz Carlos - LEITE, Fabio Lima. Antibody-mediated biorecognition of myelin oligodendrocyte glycoprotein: computational evidence of demyelination-related epitopes. In SCIENTIFIC REPORTS. ISSN 2045-2322, 2019, vol. 9, no., pp. [WoS]
2019-2019: [1] MARCHAN, Jose. In silico identification of epitopes present in human heat shock proteins (HSPs) overexpressed by tumour cells. In JOURNAL OF IMMUNOLOGICAL METHODS. ISSN 0022-1759, 2019, vol. 471, no., pp. 34-45. [WoS]
2019-2019: [1] NGOC MINH NGUYEN - BAO TUAN DUONG - AZAM, Mudsser - TRUONG THAI PHUONG - PARK, Hyun - PHUNG THI BICH THUY - YEO, Seon-Ju. Diagnostic Performance of Dengue Virus Envelope Domain III in Acute Dengue Infection. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. ISSN 1661-6596, 2019, vol. 20, no. 14, pp. [WoS]
2019-2019: [1] NING, Lin - HE, Bifang - ZHOU, Peng - DADA, Ratmir - HUANG, Jian. Molecular Design of Peptide-Fc Fusion Drugs. In CURRENT DRUG METABOLISM. ISSN 1389-2002, 2019, vol. 20, no. 3, pp. 203-208. [WoS]
2019-2019: [1] QIU, Xueting - DUVVURI, Venkata R. - BAHL, Justin. Computational Approaches and Challenges to Developing Universal Influenza Vaccines. In VACCINES. ISSN 2076-393X, 2019, vol. 7, no. 2, pp. [WoS]
2019-2019: [1] SAADAT, Saman - ALIKHANI, Mohammad Y. - TEHRANI, Zahra Rikhtegaran - MASHOUF, Rasoul Yousefi. Computational design of a new chimeric protein for sero-diagnosis of Mycoplasma hominis. In GAZZETTA MEDICA ITALIANA ARCHIVIO PER LE SCIENZE MEDICHE. ISSN 0393-3660, 2019, vol. 178, no. 9, pp. 654-659. [WoS]
2019-2019: [1] SANKAR, Sathish - SARAVANAN, Nithiyanandan - RAJENDIRAN, Prashanth - RAMAMURTHY, Mageshbabu - NANDAGOPAL, Balaji - SRIDHARAN, Gopalan. Identification of B- and T-cell epitopes on HtrA protein of Orientia tsutsugamushi. In JOURNAL OF CELLULAR BIOCHEMISTRY. ISSN 0730-2312, 2019, vol. 120, no. 4, pp. 5869-5879. [WoS]
2019-2019: [1] SARTORIUS, Rossella - D'APICE, Luciana - PRISCO, Antonella - DE BERARDINIS, Piergiuseppe. Arming Filamentous Bacteriophage, a Nature-Made Nanoparticle, for New Vaccine and Immunotherapeutic Strategies. In PHARMACEUTICS, 2019, vol. 11, no. 9, pp. [WoS]
2019-2019: [1] TJOA, Stanley Evander Emeltan - VIANNEY, Yoanes Maria - PUTRA, Sulistyo Emantoko Dwi. In silico mutagenesis: decreasing the immunogenicity of botulinum toxin type A. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. ISSN 0739-1102, 2019, vol. 37, no. 18, pp. 4767-4778. [WoS]
2019-2019: [1] VEDAMURTHY, G. V. - AHMAD, Haseen - ONTERU, Suneel Kumar - SAXENA, Vijay Kumar. In silico homology modelling and prediction of novel epitopic peptides from P24 protein of Haemonchus contortus. In GENE. ISSN 0378-1119, 2019, vol. 703, no., pp. 102-111. [WoS]
2019-2019: [1] VERMA, Mansi - BHATNAGAR, Shradha - KUMARI, Kavita - MITTAL, Nidhi - SUKHRALIA, Shivani - GOPIRAJAN, Shruthi A. T. - DHANARAJ, P. S. - LAL, Rup. Highly conserved epitopes of DENV structural and non-structural proteins: Candidates for universal vaccine targets. In GENE. ISSN 0378-1119, 2019, vol. 695, no., pp. 18-25. [WoS]
2019-2019: [1] VIANNEY, Yoanes Maria - TJOA, Stanley Evander Emeltan - ADITAMA, Reza - PUTRA, Sulisyto Emantoko Dwi. Designing a less immunogenic nattokinase from Bacillus subtilis subsp. natto: a computational mutagenesis. In JOURNAL OF MOLECULAR MODELING. ISSN 1610-2940, 2019, vol. 25, no. 11, pp. [WoS]
2019-2019: [1] YARI, Maryam - ESLAMI, Mahboobeh - GHOSHOON, Mohammad Bagher - NEZAFAT, Navid - GHASEMI, Younes. Decreasing the immunogenicity of Erwinia chrysanthemi asparaginase via protein engineering: computational approach. In MOLECULAR BIOLOGY REPORTS. ISSN 0301-4851, 2019, vol. 46, no. 5, pp. 4751-4761. [WoS]
2019-2019: [1] ZAREI, Mahboubeh - NEZAFAT, Navid - RAHBAR, Mohammad Reza - NEGAHDARIPOUR, Manica - SABETIAN, Soudabeh - MOROWVAT, Mohammad Hossein - GHASEMI, Younes. Decreasing the immunogenicity of arginine deiminase enzyme via structure-based computational analysis. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. ISSN 0739-1102, 2019, vol. 37, no. 2, pp. 523-536. [WoS]
2019-2019: [1] ZHOU, Chen - CHEN, Zikun - ZHANG, Lu - YAN, Deyu - MAO, Tiantian - TANG, Kailin - QIU, Tianyi - CAO, Zhiwei. SEPPA 3.0-enhanced spatial epitope prediction enabling glycoprotein antigens. In NUCLEIC ACIDS RESEARCH. ISSN 0305-1048, 2019, vol. 47, no. W1, pp. W388-W394. [WoS]
2019-2019: [1] ZOBAYER, Nayem - HOSSAIN, A. B. M. Aowlad - RAHMAN, Md Asadur. A combined view of B-cell epitope features in antigens. In BIOINFORMATION. ISSN 0973-8894, 2019, vol. 15, no. 7, pp. 530-533. [WoS]
2018-2018: [1] BERMUDEZ-MENDEZ, Erick - FUGLSANG-MADSEN, Albert - FONS, Sofie - LOMONTE, Bruno - MARIA GUTIERREZ, Jose - LAUSTSEN, Andreas Hougaard. Innovative Immunization Strategies for Antivenom Development. In TOXINS. ISSN 2072-6651, 2018, vol. 10, no. 11, pp. [WoS]
2018-2018: [1] CELLA, Eleonora - GIOVANETTI, Marta - MILANO, Teresa - FOGOLARI, Marta - GARILLI, Francesco - ALEXIEV, Ivailo - BAZZARDI, Riccardo - SALEMI, Marco - JUNIOR ALCANTARA, Luiz - ANGELETTI, Silvia - PASCARELLA, Stefano - CICCOZZI, Massimo. Mayaro virus infection, the next epidemic wave after Zika? Evolutionary and structural analysis. In Asian Pacific Journal of Tropical Medicine. ISSN 19957645, 2018-03-01, 11, 3, pp. 194-201. [Scopus]
2018-2018: [1] CHANDELE, Anmol. New Technologies for Vaccine Development: Harnessing the Power of Human Immunology. In JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE. ISSN 0970-4140, 2018, vol. 98, no. 1, pp. 33-47. [WoS]
2018-2018: [1] COPLEY, Hannah C. - ELANGO, Madhivanan - KOSMOLIAPTSIS, Vasilis. Assessment of human leukocyte antigen immunogenicity: current methods, challenges and opportunities. In CURRENT OPINION IN ORGAN TRANSPLANTATION. ISSN 1087-2418, 2018, vol. 23, no. 4, pp. 477-485. [WoS]
2018-2018: [1] GUO, Zhu - WILSON, Jason R. - YORK, Ian A. - STEVENS, James. Biosensor-based epitope mapping of antibodies targeting the hemagglutinin and neuraminidase of influenza A virus. In JOURNAL OF IMMUNOLOGICAL METHODS. ISSN 0022-1759, 2018, vol. 461, no., pp. 23-29. [WoS]
2018-2018: [1] KAZI, Ada - CHUAH, Candy - MAJEED, Abu Bakar Abdul - LEOW, Chiuan Herng - LIM, Boon Huat - LEOW, Chiuan Yee. Current progress of immunoinformatics approach harnessed for cellular- and antibody-dependent vaccine design. In Pathogens and Global Health. ISSN 20477724, 2018-04-03, 112, 3, pp. 123-131. [Scopus]
2018-2018: [1] MALLON, Dermot H. - KLING, Christiane - ROBB, Matthew - ELLINGHAUS, Eva - BRADLEY, J. Andrew - TAYLOR, Craig J. - KABELITZ, Dieter - KOSMOLIAPTSIS, Vasilis. Predicting Humoral Alloimmunity from Differences in Donor and Recipient HLA Surface Electrostatic Potential. In JOURNAL OF IMMUNOLOGY. ISSN 0022-1767, 2018, vol. 201, no. 12, pp. 3780-3792. [WoS]
2018-2018: [1] MANAVALAN, Balachandran - GOVINDARAJ, Rajiv Gandhi - SHIN, Tae Hwan - KIM, Myeong Ok - LEE, Gwang. iBCE-EL: A New Ensemble Learning Framework for Improved Linear B-Cell Epitope Prediction. In FRONTIERS IN IMMUNOLOGY. ISSN 1664-3224, 2018, vol. 9, no., pp. [WoS]
2018-2018: [1] NARULA, Aruna - PANDEY, Rajan Kumar - KHATOON, Nazia - MISHRA, Amit - PRAJAPATI, Vijay Kumar. Excavating chikungunya genome to design B and T cell multi-epitope subunit vaccine using comprehensive immunoinformatics approach to control chikungunya infection. In INFECTION GENETICS AND EVOLUTION. ISSN 1567-1348, 2018, vol. 61, no., pp. 4-15. [WoS]
2018-2018: [1] NG, Allan Wee Ren - TAN, Pei Jun - HOO, Winfrey Pui Yee - LIEW, Dek Shen - TEO, Michelle Yee Mun - SIAK, Pui Yan - NG, Sze Man - TAN, Ee Wern - RAHIM, Raha Abdul - LIM, Renee Lay Hong - SONG, Adelene Ai Lian - IN, Lionel Lian Aun. In silico-guided sequence modifications of K-ras epitopes improve immunological outcome against G12V and G13D mutant KRAS antigens. In PEERJ. ISSN 2167-8359, 2018, vol. 6, no., pp. [WoS]
2018-2018: [1] OJHA, Rupal - KHATOON, Nazia - PRAJAPATI, Vijay Kumar. Conglomeration of novel Culex quinquefasciatus salivary proteins to contrive multi-epitope subunit vaccine against infections caused by blood imbibing transmitter. In International Journal of Biological Macromolecules. ISSN 01418130, 2018-10-15, 118, pp. 834-843. [Scopus]
2018-2018: [1] PAULL, Michael L. - DAUGHERTY, Patrick S. Mapping serum antibody repertoires using peptide libraries. In CURRENT OPINION IN CHEMICAL ENGINEERING. ISSN 2211-3398, 2018, vol. 19, no., pp. 21-26. [WoS]
2018-2018: [1] QUARMBY, Valerie - PHUNG, Qui T. - LILL, Jennie R. MAPPs for the identification of immunogenic hotspots of biotherapeutics; an overview of the technology and its application to the biopharmaceutical arena. In EXPERT REVIEW OF PROTEOMICS. ISSN 1478-9450, 2018, vol. 15, no. 9, pp. 733-748. [WoS]
2018-2018: [1] REZENDE, Cíntia M.F. - COITINHO, Juliana B. - COSTA, Mariana - SILVA, Marina Rodrigues - GIUSTA, Mário - OLIVEIRA-PRADO, Roberta - CORRÊA-OLIVEIRA, Rodrigo - NAGEM, Ronaldo - GOES, Alfredo M. Biochemical analysis and identification of linear B-cell epitopes from recombinant Sm21.7 antigen from Schistosoma mansoni. In Molecular Immunology. ISSN 01615890, 2018-09-01, 101, pp. 29-37. [Scopus]
2018-2018: [1] SACHSE, Konrad - RAHMAN, Kh. Shamsur - SCHNEE, Christiane - MUELLER, Elke - PEISKER, Madlen - SCHUMACHER, Thomas - SCHUBERT, Evelyn - RUETTGER, Anke - KALTENBOECK, Bernhard - EHRICHT, Ralf. A novel synthetic peptide microarray assay detects Chlamydia species-specific antibodies in animal and human sera. In SCIENTIFIC REPORTS. ISSN 2045-2322, 2018, vol. 8, no., pp. [WoS]
2018-2018: [1] SATYAM, Rohit - JANAHI, Essam Mohammed - BHARDWAJ, Tulika - SOMVANSHI, Pallavi - HAQUE, Shafiul - NAJM, Mohammad Zeeshan. In silico identification of immunodominant B-cell and T-cell epitopes of non-structural proteins of Usutu Virus. In MICROBIAL PATHOGENESIS. ISSN 0882-4010, 2018, vol. 125, no., pp. 129-143. [WoS]
2018-2018: [1] SOUSA, Sílvia A. - SEIXAS, António M.M. - LEITÃO, Jorge H. Postgenomic approaches and bioinformatics tools to advance the development of vaccines against bacteria of the burkholderia cepacia complex. In Vaccines, 2018-06-01, 6, 2, pp. [Scopus]
2018-2018: [1] USMANI, Salman Sadullah - KUMAR, Rajesh - BHALLA, Sherry - KUMAR, Vinod - RAGHAVA, Gajendra P.S. In Silico Tools and Databases for Designing Peptide-Based Vaccine and Drugs. In Advances in Protein Chemistry and Structural Biology. ISSN 18761623, 2018-01-01, 112, pp. 221-263. [Scopus]
2018-2018: [1] ZHANG, Fengbo - LI, Shaoyu - ZHU, Yuejie - ZHANG, Chuntao - LI, Yujiao - MA, Haimei - PANG, Nannan - AN, Mengting - WANG, Hongying - DING, Jianbing. Immunization of mice with egG1Y162-1/2 provides protection against Echinococcus granulosus infection in BALB/c mice. In Molecular Immunology. ISSN 01615890, 2018-02-01, 94, pp. 183-189. [Scopus]
2017-2017: [1] ALONSO-PADILLA, Julio - LAFUENTE, Esther M. - RECHE, Pedro A. Computer-Aided Design of an Epitope-Based Vaccine against Epstein-Barr Virus. In Journal of Immunology Research. ISSN 23148861, 2017-01-01, 2017, pp. [Scopus]
2017-2017: [1] MATOS, Carlos Antonio - GONCALVES, Luiz Ricardo - OBREGON ALVAREZ, Dasiel - FRESCHI, Carla Roberta - DA SILVA, Jenevaldo Barbosa - VAL-MORAES, Silvana Pompeia - MENDES, Natalia Serra - ANDRE, Marcos Rogerio - MACHADO, Rosangela Zacarias. Longitudinal evaluation of humoral immune response and merozoite surface antigen diversity in calves naturally infected with Babesia bovis, in Sao Paulo, Brazil. In REVISTA BRASILEIRA DE PARASITOLOGIA VETERINARIA. ISSN 1984-2961, 2017, vol. 26, no. 4, pp. 479-490. [WoS]
2017-2017: [1] MOTOYA, Takumi - NAGASAWA, Koo - MATSUSHIMA, Yuki - NAGATA, Noriko - RYO, Akihide - SEKIZUKA, Tsuyoshi - YAMASHITA, Akifumi - KURODA, Makoto - MORITA, Yukio - SUZUKI, Yoshiyuki - SASAKI, Nobuya - KATAYAMA, Kazuhiko - KIMURA, Hirokazu. Molecular Evolution of the VP1 Gene in Human Norovirus GII.4 Variants in 1974-2015. In FRONTIERS IN MICROBIOLOGY. ISSN 1664-302X, 2017, vol. 8, no., pp. [WoS]
2017-2017: [1] VÁZQUEZ-PRIETO, Severo - PANIAGUA, Esperanza - SOLANA, Hugo - UBEIRA, Florencio M. Complex network study of the immune epitope database for parasitic organisms. In Current Topics in Medicinal Chemistry. ISSN 15680266, 2017-12-01, 17, 30, pp. 3249-3255. [Scopus]
0000-0000: [0] [WoS]